Gene detail

Detail information of GWHGAAEX014904/evm.TU.scaffold_63.82

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743760385\|ref\|XP_010936594.1\|	1.84E-58	PREDICTED: uncharacterized protein LOC105056177 isoform X2 [Elaeis guineensis]
Swissprot	tr\|P37707\|B2_DAUCA	4.00E-17	B2 protein
trEMBL	tr\|Q658G0\|Q658G0_ORYSJ	3.00E-47	Putative uncharacterized protein P0015E04.5 {ECO:0000313\|EMBL:BAD44807.1}
TAIR	AT2G35140	4.00E-43	DCD (Development and Cell Death) domain protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	1767613	1780012	+

Transcript Sequence
>GWHTAAEX014904 AGGGTAACTAATGCCACTCGTTGATGATAGCAGGGTCTTAAAATCGAACGCGATTGATACCTCGATCTCTTCGCAATCTCGAAATTTCTTAAACTTCGGTTGCCGCTCCCTTTATACTTTTCTAATCTCAACTCGCGGCCCACCGGATATGTGTCTAGTCTGGCGACATGGCTGAATTCGAGCCAAGGGGCTATTTCTTGTTCAAACTCACCGTTGTGCATGCATAAGGCTGGGTTCGATGGAACACGAGAAGCTCAATGTTGTCCAGAGCAATGGCTTTATTTTTGCAGGTGCAATTTTTATGTCCAACCGTGAAACAAAGCTTGAATGTCTGAGGAGGAAGCTTTTTGGTCTTCCACTTTCTCAGATTAAGTTTTTGAATCAAGTTAAAGCAGGCATGATTCTGTTTCTTTTTGAGCACGAAAAAAGGAAACTCTATGGGGTGTTTGAAGCGACCTCTGATGGCGCCTTGAACATAGTACCTGATGCATTTGTATCGACGGGGAGGTCATATCCTGCTCAGATTCTTTTCAAGAGGGTATGGATTTGCAAACCTCTTCGTGAGGATGAATTTCGTAGTGCTATTGAAGAGAACTACTACACTCAAAACAAGTTCCACTTCGGTCTGTCATACGGACAGGTCGTCAACCTGATTCATTTGTTCAATTATTCAAGAAGGATTAACTTCGAGCAGAAGCAGGGAGATGCGATCCCCAACAGAAACATTGTCATCAAGCTCGAGAACAAATTGCCAGACAAGAGCAGACCAACTGAAACTGTAATAACATATTTCAAGCCCAAATCTGAGAATTACAGCAGGGAAGAAGGAAAGAGCGAAGCTGCGAAACTATTTACGTTACCGCCGCAAGCTTCGCCATCAAATCCCCCGTCGCCATACGCAACAGGAGTTTCAAATCAACTGAACATATCCTTTTCATCCTGTCCCCATCCTTCCTGTTCACAATCCCTGATTTCCCAAAGGAATTCGCTTCACCTTCCTTATGATCCTACTGATTTCCCCCATTTTTCTACCGCTTCAGATACGGAATACGTGCCTTTGCCCGTCGTCCAGTCGCCATGCTATTCATCCAATTTCGATAGCATGCCGTGCAAGCTGCCTTGCTGTTACTACGGATCACAGGCGAATCAGGACTACTCGGAGTTTCCTGATTACATACCTTTAACAGAAGAATCTCAACATACACCTGTCGGCAATCAGAGCCTGAGCTCTGAATACATCCCTGTTTCTTACATTCCGAGCACATGCAAGAAGATTTCGAACTTTTTTTTTGACGAGATGATGGCGCATCAGAGAAGAATAGTGGAGACTGACGAACATTACCGACTCCATGCGGACGATTTCGATTCGAGCCGAACCAGCGTTTTTTCTCGCTTGTCCCGACATCCGGATCCCTGTGATCCCGAGGCTCCCGAACCGTCTTCATCGCTCGACAAGCTCATGAGCATCCTTTCAGAGAGGAGAAGAATGTGGAAGAAGAATAAGCCATCGGAGCAGTCGGTCGACCCGGGCGGTGTTTTCGAGCGATATAGATGCACGGCGGAGAGGAGCAAGACCGATCAATTCGACGAGGCGGAAGACGCCGGATTTAATTCCGCCATGGAAGTGGATCCAAGCAACGATGTCGTCGATGAAGAGAGCTTCGAGCTCACCTTCTATAATTTCAAGCGCCGGAACGCGCCCCGAACGTGCGAGGCGGGAGAGGATTCCGAGAACTGCGGGGGCGGCAAGAGGAAGCGGATGGTGCGGCCTTTTATAGATGCGAGCACAGAGGCGGGAAAAGAGAGCGATGCAGGTAGCGACGTGTTCGTGTTGGAAACAGGTAGCAAACACGAACCGGATGGCGAGCCGGCTGAGCAGAATCAGACGGTATCTGCAGAATTGTCAGCGGATTATATTCCGATTGATTAAATATGAATAATAACTCATTTTAAAAAAATGCATTAAAACTTTCTTATATTTAAATATTATTAAAAAATGGGATAATTTCCAGCTTTGCACGTAATTTGTGTAATTATAAACTGAATATCTAAGTTTTGATTCTAGATTTAGGGGTTAGTGTGTAAATTGAATTTCTGAAAGTTAAAATTTTTTTGTTGAACATAATTGAAAGGGG

Network for GWHGAAEX014904

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10539.8	Dev_Cell_Death	17	142	3.40E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.610
SRP064423	SRR2545915	Juvenile tuber	34.980
SRP108465	SRR5643513	five period of Gastrodia elata	39.720
	SRR5643514	five period of Gastrodia elata	36.050
	SRR5643515	five period of Gastrodia elata	34.070
	SRR5643524	five period of Gastrodia elata	35.130
	SRR5643525	five period of Gastrodia elata	35.780
	SRR5643528	five period of Gastrodia elata	25.320
	SRR5643658	five period of Gastrodia elata	36.620
	SRR5643659	five period of Gastrodia elata	33.880
	SRR5643660	five period of Gastrodia elata	36.680
	SRR5643661	five period of Gastrodia elata	33.130
	SRR5643662	five period of Gastrodia elata	36.360
	SRR5643663	five period of Gastrodia elata	40.190
	SRR5643664	five period of Gastrodia elata	39.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.800
SRP279888	Gastro	Gastrodia elata tuber	47.30
	Juven	Juvenile tuber	40.61
	Mother_Gastro	Mother tuber of Gastrodia elata	46.63
	Mother_Juven	Mother tuber of Juvenile	32.31