Detail information of GWHGAAEX014906/evm.TU.scaffold_63.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307595514|ref|YP_003901831.1| | 3.00E-101 | translation elongation factor aEF-2 [Vulcanisaeta distributa DSM 14429] |
| KOG | KOG0468 | 0 | U5 snRNP-specific protein |
| nr | gi|743859052|ref|XP_010942549.1| | 0 | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Elaeis guineensis] |
| Swissprot | tr|O23755|EF2_BETVU | 0 | Elongation factor 2 |
| trEMBL | tr|M0SME5|M0SME5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P09280_001} |
| TAIR | AT1G06220 | 0 | Ribosomal protein S5/Elongation factor G/III/V family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1854317 | 1865170 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014906
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16004.4 | EFTUD2 | 5 | 129 | 3.30E-34 |
| PF00009.26 | GTP_EFTU | 149 | 463 | 3.00E-48 |
| PF03144.24 | GTP_EFTU_D2 | 516 | 590 | 3.00E-12 |
| PF03764.17 | EFG_IV | 731 | 847 | 2.70E-24 |
| PF00679.23 | EFG_C | 850 | 938 | 2.20E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12852 | EFTUD2 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.480 |
| SRR2545915 | Juvenile tuber | 35.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.560 |
| SRR5643514 | five period of Gastrodia elata | 40.480 | |
| SRR5643515 | five period of Gastrodia elata | 33.860 | |
| SRR5643524 | five period of Gastrodia elata | 39.240 | |
| SRR5643525 | five period of Gastrodia elata | 25.960 | |
| SRR5643528 | five period of Gastrodia elata | 25.060 | |
| SRR5643658 | five period of Gastrodia elata | 22.970 | |
| SRR5643659 | five period of Gastrodia elata | 50.500 | |
| SRR5643660 | five period of Gastrodia elata | 54.730 | |
| SRR5643661 | five period of Gastrodia elata | 53.770 | |
| SRR5643662 | five period of Gastrodia elata | 48.360 | |
| SRR5643663 | five period of Gastrodia elata | 44.910 | |
| SRR5643664 | five period of Gastrodia elata | 47.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 51.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 48.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 43.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.89 |
| Juven | Juvenile tuber | 64.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.33 | |
| Mother_Juven | Mother tuber of Juvenile | 40.31 |