Detail information of GWHGAAEX014911/evm.TU.scaffold_63.88
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 9.00E-133 | FOG: PPR repeat |
| nr | gi|743810830|ref|XP_010929003.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g02750-like [Elaeis guineensis] |
| Swissprot | tr|Q9SY02|PP301_ARATH | 3.00E-133 | Pentatricopeptide repeat-containing protein At4g02750 |
| trEMBL | tr|A0A067JCX8|A0A067JCX8_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP21686.1} |
| TAIR | AT4G02750 | 9.00E-133 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1892053 | 1893846 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014911
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 41 | 67 | 0.0017 |
| PF01535.19 | PPR | 71 | 99 | 0.00035 |
| PF12854.6 | PPR_1 | 126 | 157 | 2.60E-10 |
| PF12854.6 | PPR_1 | 161 | 188 | 5.10E-06 |
| PF13041.5 | PPR_2 | 192 | 235 | 5.90E-08 |
| PF13041.5 | PPR_2 | 285 | 331 | 3.80E-09 |
| PF01535.19 | PPR | 357 | 382 | 0.5 |
| PF01535.19 | PPR | 385 | 412 | 0.005 |
| PF01535.19 | PPR | 420 | 447 | 0.12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.740 | |
| SRR5643528 | five period of Gastrodia elata | 1.360 | |
| SRR5643658 | five period of Gastrodia elata | 3.540 | |
| SRR5643659 | five period of Gastrodia elata | 4.120 | |
| SRR5643660 | five period of Gastrodia elata | 2.510 | |
| SRR5643661 | five period of Gastrodia elata | 5.110 | |
| SRR5643662 | five period of Gastrodia elata | 4.380 | |
| SRR5643663 | five period of Gastrodia elata | 9.030 | |
| SRR5643664 | five period of Gastrodia elata | 5.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.33 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |