Detail information of GWHGAAEX014914/evm.TU.scaffold_63.93
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338733041|ref|YP_004671514.1| | 1.00E-06 | hypothetical protein SNE_A11460 [Simkania negevensis Z] |
| KOG | KOG1716 | 2.00E-88 | Dual specificity phosphatase |
| nr | gi|743767425|ref|XP_010913975.1| | 2.90E-129 | PREDICTED: protein-tyrosine-phosphatase IBR5-like [Elaeis guineensis] |
| Swissprot | tr|Q84JU4|IBR5_ARATH | 7.00E-95 | Protein-tyrosine-phosphatase IBR5 |
| trEMBL | tr|M0TI77|M0TI77_MUSAM | 1.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P16900_001} |
| TAIR | AT2G04550 | 2.00E-88 | indole-3-butyric acid response 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1983545 | 1996384 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014914
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00782.19 | DSPc | 55 | 178 | 7.80E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04459 | DUSP, MKP | MAPK signaling pathway | map04010 |
| Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0008138 | Molecular Function | protein tyrosine/serine/threonine phosphatase activity |
| GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
| GO:0016791 | Molecular Function | phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.640 |
| SRR2545915 | Juvenile tuber | 29.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.110 |
| SRR5643514 | five period of Gastrodia elata | 42.780 | |
| SRR5643515 | five period of Gastrodia elata | 46.090 | |
| SRR5643524 | five period of Gastrodia elata | 48.680 | |
| SRR5643525 | five period of Gastrodia elata | 76.740 | |
| SRR5643528 | five period of Gastrodia elata | 81.820 | |
| SRR5643658 | five period of Gastrodia elata | 84.540 | |
| SRR5643659 | five period of Gastrodia elata | 39.870 | |
| SRR5643660 | five period of Gastrodia elata | 41.220 | |
| SRR5643661 | five period of Gastrodia elata | 45.040 | |
| SRR5643662 | five period of Gastrodia elata | 44.170 | |
| SRR5643663 | five period of Gastrodia elata | 35.660 | |
| SRR5643664 | five period of Gastrodia elata | 42.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.26 |
| Juven | Juvenile tuber | 28.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 90.79 | |
| Mother_Juven | Mother tuber of Juvenile | 61.25 |