Detail information of GWHGAAEX014917/evm.TU.scaffold_63.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-84 | FOG: PPR repeat |
| nr | gi|672160119|ref|XP_008799833.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q8L6Y7|PP193_ARATH | 1.00E-84 | Pentatricopeptide repeat-containing protein At2g38420, mitochondrial (Precursor) |
| trEMBL | tr|M0RR48|M0RR48_MUSAM | 2.00E-163 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P10680_001} |
| TAIR | AT2G38420 | 4.00E-84 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 2008493 | 2011482 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014917
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 168 | 213 | 6.50E-10 |
| PF13041.5 | PPR_2 | 239 | 282 | 2.20E-10 |
| PF13041.5 | PPR_2 | 304 | 350 | 1.10E-11 |
| PF01535.19 | PPR | 378 | 407 | 0.00022 |
| PF01535.19 | PPR | 413 | 441 | 0.0033 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.950 |
| SRR2545915 | Juvenile tuber | 6.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.650 |
| SRR5643514 | five period of Gastrodia elata | 4.900 | |
| SRR5643515 | five period of Gastrodia elata | 4.180 | |
| SRR5643524 | five period of Gastrodia elata | 4.930 | |
| SRR5643525 | five period of Gastrodia elata | 4.230 | |
| SRR5643528 | five period of Gastrodia elata | 1.500 | |
| SRR5643658 | five period of Gastrodia elata | 2.780 | |
| SRR5643659 | five period of Gastrodia elata | 5.040 | |
| SRR5643660 | five period of Gastrodia elata | 6.420 | |
| SRR5643661 | five period of Gastrodia elata | 2.830 | |
| SRR5643662 | five period of Gastrodia elata | 4.110 | |
| SRR5643663 | five period of Gastrodia elata | 5.250 | |
| SRR5643664 | five period of Gastrodia elata | 5.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.39 |
| Juven | Juvenile tuber | 12.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.80 | |
| Mother_Juven | Mother tuber of Juvenile | 8.42 |