Detail information of GWHGAAEX014920/evm.TU.scaffold_63.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2549 | 0 | Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) |
| nr | gi|695023223|ref|XP_009398769.1| | 0 | PREDICTED: transcription initiation factor TFIID subunit 6-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9MAU3|TAF6_ARATH | 0 | Transcription initiation factor TFIID subunit 6 |
| trEMBL | tr|M0SQ98|M0SQ98_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19350_001} |
| TAIR | AT1G04950 | 0 | TATA BOX ASSOCIATED FACTOR II 59 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 2063414 | 2069448 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014920
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02969.16 | TAF | 47 | 111 | 3.30E-31 |
| PF07571.12 | TAF6_C | 310 | 396 | 1.80E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03131 | TAF6 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter |
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.160 |
| SRR2545915 | Juvenile tuber | 20.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.840 |
| SRR5643514 | five period of Gastrodia elata | 19.330 | |
| SRR5643515 | five period of Gastrodia elata | 15.480 | |
| SRR5643524 | five period of Gastrodia elata | 21.320 | |
| SRR5643525 | five period of Gastrodia elata | 15.690 | |
| SRR5643528 | five period of Gastrodia elata | 15.830 | |
| SRR5643658 | five period of Gastrodia elata | 16.730 | |
| SRR5643659 | five period of Gastrodia elata | 11.080 | |
| SRR5643660 | five period of Gastrodia elata | 12.290 | |
| SRR5643661 | five period of Gastrodia elata | 10.810 | |
| SRR5643662 | five period of Gastrodia elata | 11.880 | |
| SRR5643663 | five period of Gastrodia elata | 10.670 | |
| SRR5643664 | five period of Gastrodia elata | 9.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.01 |
| Juven | Juvenile tuber | 18.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.44 | |
| Mother_Juven | Mother tuber of Juvenile | 19.64 |