Detail information of GWHGAAEX014922/evm.TU.scaffold_63.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113477422|ref|YP_723483.1| | 1.00E-177 | arginyl-tRNA synthetase [Trichodesmium erythraeum IMS101] |
| KOG | KOG4426 | 0 | Arginyl-tRNA synthetase |
| nr | gi|743842636|ref|XP_010937859.1| | 0 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Elaeis guineensis] |
| trEMBL | tr|M0TD62|M0TD62_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P36190_001} |
| TAIR | AT4G26300 | 0 | Arginyl-tRNA synthetase, class Ic |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 2085877 | 2121482 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014922
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03485.15 | Arg_tRNA_synt_N | 30 | 118 | 7.00E-17 |
| PF00750.18 | tRNA-synt_1d | 145 | 482 | 3.80E-117 |
| PF05746.14 | DALR_1 | 496 | 610 | 2.10E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01887 | RARS, argS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006420 | Biological Process | arginyl-tRNA aminoacylation |
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0004814 | Molecular Function | arginine-tRNA ligase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.130 |
| SRR2545915 | Juvenile tuber | 50.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.170 |
| SRR5643514 | five period of Gastrodia elata | 36.550 | |
| SRR5643515 | five period of Gastrodia elata | 32.910 | |
| SRR5643524 | five period of Gastrodia elata | 32.760 | |
| SRR5643525 | five period of Gastrodia elata | 15.150 | |
| SRR5643528 | five period of Gastrodia elata | 13.170 | |
| SRR5643658 | five period of Gastrodia elata | 12.530 | |
| SRR5643659 | five period of Gastrodia elata | 36.170 | |
| SRR5643660 | five period of Gastrodia elata | 45.550 | |
| SRR5643661 | five period of Gastrodia elata | 43.720 | |
| SRR5643662 | five period of Gastrodia elata | 38.730 | |
| SRR5643663 | five period of Gastrodia elata | 35.700 | |
| SRR5643664 | five period of Gastrodia elata | 37.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.16 |
| Juven | Juvenile tuber | 44.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.94 | |
| Mother_Juven | Mother tuber of Juvenile | 23.63 |