Gene detail

Detail information of GWHGAAEX014928/evm.TU.scaffold_63.107

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|291288388\|ref\|YP_003505204.1\|	5.00E-08	hypothetical protein Dacet_2488 [Denitrovibrio acetiphilus DSM 12809]
KOG	KOG2076	2.00E-178	RNA polymerase III transcription factor TFIIIC
nr	gi\|743815629\|ref\|XP_010930399.1\|	0	PREDICTED: general transcription factor 3C polypeptide 3 isoform X4 [Elaeis guineensis]
trEMBL	tr\|M0RH76\|M0RH76_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P11000_001}
TAIR	AT1G17680	2.00E-178	tetratricopeptide repeat (TPR)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	2154145	2206669	-

Transcript Sequence
>GWHTAAEX014928 AGCGCCGGTGCTCCGCCTTTTCTTCGCCTCGCCTCATCGATTTCGTCAACGCAGTTGAAGTGGAAGACAACGATGGAAGAGGAAGAGGAGGTTGGCCGTGACAGTGAATTTGAGGACGTGGATGACAGTGAACCCAATGATGCGGAAAACGGCAATAGAGAGGCAGGTGATGATGATGATGACGAAGAAGAGGATTACACTTTGCAATTCGAGGCAGCAATGGTCCCCCTTGGCTTCATCCAAGAGGGAGATAAAGAGGGTGCTTACCTCTACCAGCATTTAGAGCGGCTCGAGTACGAAACCCTTTCTGAAAGGAAGCGCAAGGCTTCCCTGCAACAATCGTGCGACGACAAAACAAAGAAACTTAAAAAAGATGCCTTGCTGGGTGTTACCATGGAAGAAATTGAGGAAATGATGAATTATGGTCGCCGTAAAAGAAGAGCAAAAACAGCCAAAAAAAGGGGAAGGAAGAAAGGGTCTCGAAATATGCTTAGTCCTGAAGTGAACATAAAAATTGGCGATGCGACCCTCCACTTTGCATCTGGAAACTACAATGAGGCAATCCCCATATTAGAAGAAGTTGTTCAGCTTGCTCCTAATCTACCTGATTCATACCGCTTACTTGGTCTTATATATGATGCTATGAATGATCGGAAGAAAGCGCTGAATTTTCACATGATATCTGCACATTTGTCACCAAAGGATGTATCCCTATGGAAGAAGCTTATTGCTTGGTCAATTGAACAGAAAAATTATGGTCAGGCTAGATATTGTCTTTCAAAGGCAATAGCAGCCGATCCAAAGGACCTTGGCCTTCGTTTTGATCGTGCATTGATTTATTTTGATCTTGGAGAGTATCATATGGCTGCAGACTCATATGATCAGATTATTGGTCTCTATCCTGCTAATGCTGAAGCACGTAAGATGGCAGCTATGATGCATCAAAAGTGTGGTCAGCTGGAAAAAGGCATTGACATCTTGGAGGATTTTGTTAATAACCATCCTGTTGAAGCTGATATCAGTCTTTTTGACCTGCTGATTGCTTTGCACATGGAAAATAAATCATATAATAAGGCTCTTCAGCTGATTGAGAAGGCACAATCAGCCTGTGGCTCATATAAAGAATTATCATTATATTTGAAATCTAGAAAAGCAGTTTGTAATGCTCATCTTGGAAACCTGGAAATTGCAGAGGATTTTCTTCAAGATTTGCAGATGGGACATACTGAAGACAACTATGACTTGATTAATGAAACTGCTGAAACATTTCTAGCTCTTGGTCATCACCACAATGCTTTAAAGTTGTATTTCATTCTGGACAGGGCTGCTCATATTGAAAAGGCAACCTTATATCTAAAGATTGGACAATGCTATGTATCGTTAAGTGAAAGAAGCAAAGCTATTCCATTCTATTATAAAGCTTTGGAAAAGCTGGATGACAATATTGATGCTCGTATAACTTTGTCATCCCTTCTTATGGAAGAAGAAAAGGAAGATGCCGCAATCTCACTGCTGTCACCTTTACAATGCTCAAAGACCATATCTGATGTTCTTTCTACGCATTCCAAACATTGGTGGCATAGTGAGAAAGTCAAGATGCAACTTGCAAAGATTTATTATTCCAAAGGGAGGCTTGAGGAGTTTGTTGACGTAATATTTCCTTCTGTTCATAAAACGTTACTTGTTGAATCAATGAATCAAAAGATCAAGGTCAGAACGAAAAAGAGACTCACAAAAAATGATCTTTTTGAAAGAGTCAAGTTGTTGGACGATCAGCAGGAAGATAATGTATTTTGTGGCTTTAGACCTGTTGCAACATCTTCAGAACTGTTAAAAGCCAATAGAGCAAAGAAATCTCTTGAAAAACAAGCGGCCATACTAGAGGAGAAGAAAGAGGCCGCATTGTCTGCAGGAATGGTTTGGCAATGTGAAAACTCATACGATGATGCACAAAACAATGATGCACCGAAAGAAATTCAAAGCCCTCCTCTCCCTAATCTCTTTAAAGATGAAGAACATCAGCAACTTTTACTAGATCTCTGCAAAACTATGGTATCCTTGCATCGTTATTCAGAAGTGTTAGAGATTATTAATCATGTAACAAGATTACCAAGTGACTTGATATCTTCCGAGAAAAAAGAAGAGCTTCAATTATTGGGCTCCCAAATAGCATGTATTGCTCCTGATCCAAAGCATGCTTATGATTATGCTCGAAATATGGTGCGGCAACGTCCTTACAACATTTCAGCGTGGAACTCATATTACAAAGTAATTTTAAGATTTCAAAATAGATTTGGAAAGCATCTCAAGTTTCTGCATCAAATGAGGGTTATGTACAGAGACTGTTTGCCTCCAATGATTATTAACGGGAATCAATTTACCATGCAAAGCATGCATCAGGCCGCTGCTGAGGAATATCTGCTTGCTTACAGACTCCAGCCCAAGGATCCACTAATCAATCTCTGCGTCGGCACAGCTTTGATCAACCTTGCACTTGGCCTTAGGCTCCAAAATAAGCATCAATGCGTGGTTCAAGGCCTTGCATTTTTCTACAACTATCTGCGTTTATGCAATAACAGCCAGGAAGCCTTGTACAACATGGCTAGGGCATATCAGCATGTTGGGCTTGTGACTTTGGCGGCTGTGTATTATGAGAAGGTTCTTTCAATTCAGGTGAAGGATTTTCCCATTTTTCTTGAGCAGACAGAAGCACATCGGCAATTAAAAAATGTTAAACCCGGTTCATGTGCTCCGCTAAACATTAAACCCAGTTCATGCAACCTCCGCTCAGAGGCGGCCTTCAATTTGCACCTGATTTATAGGAAAAGTGGCGCTGTTGATCTCTCTAGAAAAATCTTGAGGGCTTATTGCACTTTTTAATTTTTATTAGTCCCATTATTTTATTCTTTTTAAAATTATATTTTATTTTATCTTTGTGCTAATTGTAAAAATATATAATATATATATATATA

Network for GWHGAAEX014928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13432.5	TPR_16	151	193	0.0098
PF13432.5	TPR_16	224	279	0.0083
PF13181.5	TPR_8	424	452	0.18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.840
SRP064423	SRR2545915	Juvenile tuber	10.190
SRP108465	SRR5643513	five period of Gastrodia elata	6.110
	SRR5643514	five period of Gastrodia elata	7.700
	SRR5643515	five period of Gastrodia elata	6.980
	SRR5643524	five period of Gastrodia elata	7.580
	SRR5643525	five period of Gastrodia elata	9.220
	SRR5643528	five period of Gastrodia elata	13.240
	SRR5643658	five period of Gastrodia elata	9.440
	SRR5643659	five period of Gastrodia elata	6.220
	SRR5643660	five period of Gastrodia elata	7.080
	SRR5643661	five period of Gastrodia elata	5.900
	SRR5643662	five period of Gastrodia elata	5.740
	SRR5643663	five period of Gastrodia elata	7.190
	SRR5643664	five period of Gastrodia elata	6.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.850
SRP279888	Gastro	Gastrodia elata tuber	6.75
	Juven	Juvenile tuber	5.51
	Mother_Gastro	Mother tuber of Gastrodia elata	8.98
	Mother_Juven	Mother tuber of Juvenile	6.98