Detail information of GWHGAAEX014934/evm.TU.scaffold_63.113
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|11499621|ref|NP_070863.1| | 2.00E-65 | proliferating-cell nucleolar antigen P120 [Archaeoglobus fulgidus DSM 4304] |
| KOG | KOG1122 | 0 | tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) |
| nr | gi|743859920|ref|XP_010942876.1| | 0 | PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2 isoform X1 [Elaeis guineensis] |
| trEMBL | tr|J3MZX3|J3MZX3_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB09G25520.1} |
| TAIR | AT5G55920 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 2302601 | 2323426 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014934
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01189.16 | Methyltr_RsmB-F | 236 | 446 | 1.10E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0008757 | Molecular Function | S-adenosylmethionine-dependent methyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 74.050 |
| SRR2545915 | Juvenile tuber | 77.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 49.030 |
| SRR5643514 | five period of Gastrodia elata | 49.430 | |
| SRR5643515 | five period of Gastrodia elata | 46.770 | |
| SRR5643524 | five period of Gastrodia elata | 48.300 | |
| SRR5643525 | five period of Gastrodia elata | 40.070 | |
| SRR5643528 | five period of Gastrodia elata | 42.310 | |
| SRR5643658 | five period of Gastrodia elata | 36.040 | |
| SRR5643659 | five period of Gastrodia elata | 67.460 | |
| SRR5643660 | five period of Gastrodia elata | 73.440 | |
| SRR5643661 | five period of Gastrodia elata | 69.950 | |
| SRR5643662 | five period of Gastrodia elata | 65.920 | |
| SRR5643663 | five period of Gastrodia elata | 62.080 | |
| SRR5643664 | five period of Gastrodia elata | 71.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 60.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 57.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 57.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 56.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 57.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 57.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 57.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.52 |
| Juven | Juvenile tuber | 65.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.51 | |
| Mother_Juven | Mother tuber of Juvenile | 50.06 |