Detail information of GWHGAAEX014938/evm.TU.scaffold_63.118


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|14520580|ref|NP_126055.1|3.00E-1143-hydroxy-3-methylglutaryl-coenzyme A reductase [Pyrococcus abyssi GE5]
KOGKOG248003-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase
nrgi|532130959|gb|AGT78194.1|03-hydroxy-3-methylglutaryl coenzyme A reductase [Dendrobium huoshanense]
Swissprottr|O24594|HMDH_MAIZE03-hydroxy-3-methylglutaryl-coenzyme A reductase
trEMBLtr|T1ULS4|T1ULS4_9ASPA03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIRAT1G764900hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006224437952449327+
Transcript Sequence

Network for GWHGAAEX014938

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.17HMG-CoA_red1475246.00E-145
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0015936Biological Processcoenzyme A metabolic process
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0005515Molecular Functionprotein binding
GO:0050662Molecular Functioncoenzyme binding
GO:0004420Molecular Functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.650
SRR2545915Juvenile tuber22.750
SRP108465SRR5643513five period of Gastrodia elata4.850
SRR5643514five period of Gastrodia elata15.430
SRR5643515five period of Gastrodia elata8.760
SRR5643524five period of Gastrodia elata10.410
SRR5643525five period of Gastrodia elata4.340
SRR5643528five period of Gastrodia elata6.840
SRR5643658five period of Gastrodia elata5.540
SRR5643659five period of Gastrodia elata11.950
SRR5643660five period of Gastrodia elata11.510
SRR5643661five period of Gastrodia elata13.490
SRR5643662five period of Gastrodia elata10.580
SRR5643663five period of Gastrodia elata9.630
SRR5643664five period of Gastrodia elata9.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.800
SRR6049655Rhizomagastrodiae_C368-T10_good_14.690
SRR6049656Rhizomagastrodiae_C368-T07_good_111.770
SRR6049657Rhizomagastrodiae_C368-T07_good_16.330
SRR6049658Rhizomagastrodiae_C368-T04_good_17.940
SRR6049659Rhizomagastrodiae_C368-T04_good_13.940
SRR6049660Rhizomagastrodiae_C368-T01_good_18.730
SRR6049661Rhizomagastrodiae_C368-T04_good_17.350
SRR6049662Rhizomagastrodiae_C368-T01_good_126.340
SRR6049663Rhizomagastrodiae_C368-T01_good_119.390
SRR6049664Rhizomagastrodiae_C368-T10_good_110.990
SRR6049665Rhizomagastrodiae_C368-T10_good_110.990
SRP279888GastroGastrodia elata tuber 6.06
JuvenJuvenile tuber6.19
Mother_GastroMother tuber of Gastrodia elata 1.32
Mother_JuvenMother tuber of Juvenile 2.11