Gene detail

Detail information of GWHGAAEX014942/evm.TU.scaffold_63.124

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|194336180\|ref\|YP_002017974.1\|	5.00E-28	serine/threonine protein kinase [Pelodictyon phaeoclathratiforme BU-1]
KOG	KOG1187	4.00E-146	Serine/threonine protein kinase
nr	gi\|695003369\|ref\|XP_009385133.1\|	0	PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9ASQ5\|CRCK3_ARATH	3.00E-150	Calmodulin-binding receptor-like cytoplasmic kinase 3 (Precursor)
trEMBL	tr\|M0S5B2\|M0S5B2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P05210_001}
TAIR	AT2G11520	4.00E-146	calmodulin-binding receptor-like cytoplasmic kinase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	2551362	2573465	-

Transcript Sequence
>GWHTAAEX014942 CAAAATTTAAAAATGTAAAGCTGAGAACTTTTTCTCAGCCTCCCTCGCGACTTCTCCAGTCGCTCTTCCCATTTTTTCTCAATATTCTTTTGGGATTTTTAGATTATTCTTCTGCTGAGAGCGGCAGCACCCCGATTTTGGAACGATGTGATTTTTTCCTTAAAATTAATGCTTCCGTGCTCGATTCGCAGGGCCGATGAATCCGGTGCTTGCGCTTTTGATGATTTTGGCAGCGCCGTTTTCAGGGATTGGTATCAGTCGATCGGCGGCTGAAGTTTCAAGGAGCTGCGGCGCTGATTTCGTCGGGTATCTGATCAGATCGCGGAATGGTTTTCTGCTCTTTGTTAACGGGGAGCAGATCGATGATCAAGTTTTAATGTGCGAGGCGCTGTCTTTCTATATTGCGAATAGGTGTTTGGAATCTGATTCTCAGATCGCGGAGTGGGGAGAAATCGGTGAAAAGTATTGTGGTCGAGGGCTTGAATATACTGCTGGCTTGAATCGTGATGCTCTTTCTGGAAGAAAGCTTTTATTGCAGCCTCAGGTTGATTCATCTAGCATGGATAATATCAGCAAGTCGGAACTAAATCCAGAGCAATTTAAAGGCCATGATATTAGCGTTCTGCCTACGAGCACGGCATTAGCTGTTCCAGGAATGTTCCTAGTATGTTGTGTGGTAATTTGTCCTTGCTTTCGCGCTAGGAAGAAAGAACCAATTGAACAAAAGGCTCTTGCCAAAGAACCAAATCTATCTGAATTGGTTACCATGGGAGGTTCTGCTTCGTCGGTTAGAAACCTGACTATTCAAAAAGTAGCACCAAGCTCACGTTTTTCTCTATCTCCGCAACCAAGTAGAATTGATTCATTAGAACTAACTTTAAGTCAGATCGCCAAAGCCACTCAAAACTTTTCACCTTCAATGAAGTTAGGTGAAGGAGGATTTGGAACTGTATACAAGGGCGTTTTAAATGATGGTCAATTTGTGTCTATAAAACGAGCAAAGAAGGAACATTTTGGTACCCTTCGAGATGAGTTCAGCAGCGAAGTGGAACTCCTCGCCAAAATAGAACACCGAAGTCTGGTGAGGCTGCTTGGTTACACTGAGAAAGGGGATGAAAGAATTATTGTCACCGAATACGTGCCCAACGGCACCCTCAGAGAACATCTTGATGGTCTGCATGGTCACATTCTCGATTTTAATCAGCGGCTAGAAATAGCTATTGATGTTGCTCACGCATTGACGTATCTTCATCTATATGCAGAGAAGCCAATAATCCACAGAGACGTGAAAGCATCAAACATCCTGCTGACTGAAAGCTTCAGAGCCAAGGTGTCTGATTTCGGGTTCGCGAGGACCGGGCCCATGGAAGTAGGGCAGACTCATATATCCACGAAAGTGAAGGGAACCGCCGGCTATCTCGACCCCGAATACCTGAGGACCTACCAACTAACGCCCAAGAGCGACGTCTTCTCGTTTGGAATATTGCTCGTCGAAATTCTCTCCGCCCGCCGTCCCGTCGAGATGAAGAGATCCTGCGAGGAGAGGATAACCGTCCGATGGGCATTCAGGGCATTTAATGATGGGAATGTGGGGGAGGTGCTGGACCCGAGGCTGCAGGAAGATGTAAACCTGGAAGTGGTCATGAAGATGCTCAGCTTAGCGTTCCACTGTGCAGCCCCCACGCGCGCCAACCGTCCGCTAATGAAGGAGGTCGGCGAACGGCTGTGGGAAATACGAAGAGACTTTGGGAATTCTCTCAGGGGTTGAGTCGGTCGGACTTCCGGCAGCAGCTCAATTCGGTTCTCTCTCATTTTGCATACTTAACAGCTAAATCTTAAATATTACAAAACTACCATCATGCAAATTTCTCTTATTGCGCCTAATCATTTAGAAACGGAGAGAAGAGTGTGTTTAGCGTTGTATATACCGAGGTTCAGTCGTTAGATATGTAAATACACTGGTTTTAAGTGTCGTGCATGTAATTGTCATAATTTACATATTTACCGCCCAAGCTTTCCTTTATGAAAATAAGTCTTAGTTGCGGAAAATTTTTGGGTGCTATGTATGTAAAATTATCAAGATTTAAGTTCTTTGCTGCAACTTGTTACCTTGTTTGGATGCTGCAACATGTTTTATAAGAACATATTAATGGAAAATTATGTACATACTGAATTCTTTCATATTTATGCATCGACATTCACAAATCCCAAAAATAT

Network for GWHGAAEX014942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	241	506	4.90E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.920
SRP064423	SRR2545915	Juvenile tuber	20.290
SRP108465	SRR5643513	five period of Gastrodia elata	21.830
	SRR5643514	five period of Gastrodia elata	24.820
	SRR5643515	five period of Gastrodia elata	21.080
	SRR5643524	five period of Gastrodia elata	24.070
	SRR5643525	five period of Gastrodia elata	5.640
	SRR5643528	five period of Gastrodia elata	4.110
	SRR5643658	five period of Gastrodia elata	5.220
	SRR5643659	five period of Gastrodia elata	12.910
	SRR5643660	five period of Gastrodia elata	15.350
	SRR5643661	five period of Gastrodia elata	19.250
	SRR5643662	five period of Gastrodia elata	13.030
	SRR5643663	five period of Gastrodia elata	10.630
	SRR5643664	five period of Gastrodia elata	11.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.230
SRP279888	Gastro	Gastrodia elata tuber	27.02
	Juven	Juvenile tuber	22.28
	Mother_Gastro	Mother tuber of Gastrodia elata	40.68
	Mother_Juven	Mother tuber of Juvenile	22.67