Detail information of GWHGAAEX014952/evm.TU.scaffold_63.135
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|385808713|ref|YP_005845109.1| | 2.00E-09 | RRM domain RNA-binding protein [Ignavibacterium album JCM 16511] |
| KOG | KOG0144 | 3.00E-130 | RNA-binding protein CUGBP1/BRUNO (RRM superfamily) |
| nr | gi|672130575|ref|XP_008788821.1| | 0 | PREDICTED: flowering time control protein FCA-like [Phoenix dactylifera] |
| Swissprot | tr|O04425|FCA_ARATH | 1.00E-130 | Flowering time control protein FCA |
| trEMBL | tr|F6H711|F6H711_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47958.1} |
| TAIR | AT4G16280 | 3.00E-130 | RNA binding;abscisic acid binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 2938660 | 2990247 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014952
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 124 | 188 | 3.90E-17 |
| PF00076.21 | RRM_1 | 215 | 279 | 1.30E-16 |
| PF00397.25 | WW | 646 | 673 | 2.00E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.150 |
| SRR2545915 | Juvenile tuber | 39.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.470 |
| SRR5643514 | five period of Gastrodia elata | 38.040 | |
| SRR5643515 | five period of Gastrodia elata | 38.610 | |
| SRR5643524 | five period of Gastrodia elata | 37.100 | |
| SRR5643525 | five period of Gastrodia elata | 54.040 | |
| SRR5643528 | five period of Gastrodia elata | 45.000 | |
| SRR5643658 | five period of Gastrodia elata | 54.860 | |
| SRR5643659 | five period of Gastrodia elata | 38.680 | |
| SRR5643660 | five period of Gastrodia elata | 38.990 | |
| SRR5643661 | five period of Gastrodia elata | 34.480 | |
| SRR5643662 | five period of Gastrodia elata | 31.560 | |
| SRR5643663 | five period of Gastrodia elata | 32.600 | |
| SRR5643664 | five period of Gastrodia elata | 34.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.73 |
| Juven | Juvenile tuber | 83.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.39 | |
| Mother_Juven | Mother tuber of Juvenile | 63.74 |