Detail information of GWHGAAEX014955/evm.TU.scaffold_63.138
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3264 | 1.00E-115 | Uncharacterized conserved protein |
| nr | gi|743810079|ref|XP_010928793.1| | 1.89E-127 | PREDICTED: mediator of RNA polymerase II transcription subunit 18 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SJZ6|MED18_ARATH | 3.00E-116 | Mediator of RNA polymerase II transcription subunit 18 |
| trEMBL | tr|I1NY60|I1NY60_ORYGL | 2.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0066600.1} |
| TAIR | AT2G22370 | 1.00E-115 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 3000889 | 3006788 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014955
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09637.9 | Med18 | 81 | 129 | 0.00022 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 130.340 |
| SRR2545915 | Juvenile tuber | 130.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.070 |
| SRR5643514 | five period of Gastrodia elata | 20.170 | |
| SRR5643515 | five period of Gastrodia elata | 22.920 | |
| SRR5643524 | five period of Gastrodia elata | 20.160 | |
| SRR5643525 | five period of Gastrodia elata | 30.840 | |
| SRR5643528 | five period of Gastrodia elata | 23.970 | |
| SRR5643658 | five period of Gastrodia elata | 36.870 | |
| SRR5643659 | five period of Gastrodia elata | 34.670 | |
| SRR5643660 | five period of Gastrodia elata | 35.870 | |
| SRR5643661 | five period of Gastrodia elata | 28.720 | |
| SRR5643662 | five period of Gastrodia elata | 23.000 | |
| SRR5643663 | five period of Gastrodia elata | 29.200 | |
| SRR5643664 | five period of Gastrodia elata | 28.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 51.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.72 |
| Juven | Juvenile tuber | 28.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.08 | |
| Mother_Juven | Mother tuber of Juvenile | 22.06 |