Gene detail

Detail information of GWHGAAEX014956/evm.TU.scaffold_63.139

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2562	Protein phosphatase 2 regulatory subunit
nr	gi\|743873311\|ref\|XP_010906785.1\|	PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Elaeis guineensis]
Swissprot	tr\|Q5QIT3\|2AB2B_ARATH	Serine/threonine protein phosphatase 2A regulatory subunit B''beta
trEMBL	tr\|M0RNB6\|M0RNB6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P00850_001}
TAIR	AT5G28850	Calcium-binding EF-hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	3010407	3036165	-

Transcript Sequence
>GWHTAAEX014956 CGGTGCCGCTGAATTGCCTCTTAGATTGGATCCGCCTTTTTGACGGTCCTGCTTCGATCCTTCTCCTCATTTTCTTCCCCGGCGTCTTCTTCTCCCGCGGTAGGGTTTCGAGGTCTTAAAGCCTGTATTCGATCGGATATTTTTTTTTTCGGATCATTTCACCTGCCTTCATCTTTCTCGGATGTGGGGTTCGGGAATTGATCTCGAATCGCAATCCTCTGTGTGCTGCTTTTGGAGAGTTGGATCTGGCGCTTGCTATCCGAACTTTTTCGAGCTGTTGAGAGTCGATCAGGTGATTATCGGCTGTTGTTTCTTATTCTGAACGTCGACGGGGGCTTTCATTGCTCGGTTTGTTTTTCGAATTTGAGCTCCTGTTTCATGCTCGGTGTTCGTTCCGAGGGAGCCGCGCGGGTGGTCACGATATATAGATTTGTTCAGTTGGTCTTTGGTTTGGTATTTCGTCGTTCCTAGCACCGCTTAAGTTAAATTGGGAAATGGTGATGGATGTGGAAGTAGTAAAGGACATTGCTTCTTTCGACCCGGAGCTGCTGCAGCTTCCGGAGGTCTCTTCGCCAGTTCTCAAGGATAATCCGCAGATTGCAGATCATCTATACACACATTGGCTTACGCTCCCGGAAACAGTGAAACTGGTAAAATCCATAATTGATGATGCAAAGACAGGCTTGCCTTTTAGCATTTCTGGTGTCAGTAATAATTCAAGTAATTCAAGTACCAGCACTTCGTTGCCTTCCATGTTTCCTTCTGGTGGCACGCCGCCACTTTCTCCAAGAAGCATGGCTGGATCTCCACGTACTGCAAGACGGGGTTTTGGTGTGGGGCCTTCAAATTTAGGCTCTTCATTGAAACTTGTCAGCGAGCTGGTGAAGGAAGTTATCCCGCAGTTCTATTTTCAGAATGGTCGTCCACCACCAATTGATTTAAAACGTCAATGCCTGTCCATAATTAATAAGCTTTTCTTTGGCCATGAGGGAGGGCTTAATATTCAAGAATTCAAAGCTGTTACCAAGGAAATCTGCAAGCTACCATCATTCTTTTCCAGTGCACTCTTCAGAAAAGTTGATGTTGATTGTTCTGGAATTGTTACAAGGGATGCTTTTATTGATTATTGGATCAACCGGAACACCATGACTATGGATATTGCCACTCACATATTTAATATCTTGAAACAACCTGATCGCAAGTACCTTTCCCAGGAGGATTTTAAGCCTGTTTTACGAGAGCTTTTGGCAAGCCACCCAGGGTTGGAGTTCTTACAGAATACGCCTGAGTTCCAAGATAGATACGCGGAAACTGTCATATATCGAATATATTACTATATTAATGGATCTGGAAATGGCCATCTCACTCTACGGGAGCTTAAGCGTGGAAATTTAATTTCTGCAATGCAACATGCTGATGAAGAGGAGGATATCAATAAAGTTTTAAGATATTTTTCTTATGAGCACTTTTATGTGATATATTGCAAATTTTGGGAGCTTGACACCGATCATGACTTTTTGATTGATAAGGAGAACCTTATCAAATATGGGAACCATGCACTTACATACAGGATTGTGGACAAAATCTTTTCACAGGTTCCTAGGAAGTTCACAAGCAAGGTAGAAGGAAAAATGGGCTATGAGGATTTTGTTTATTTTATATTAGCCGAAGAAGATAAATCTTCAGAGCCTAGCCTTGACTACTGGTTCAAGTGTATAGATTTGGATGGCAATGGTATTCTTACATCTAATGAGATGCAGTTCTTCTACGAGGAGCAGTTGCATCGCATGGAGTGCATGGCACAGGAACCTGTATTATTTGAAGATATTCTATGCCAGATGGTTGACATGATTGCTCCAGAGAATGAAAGATTTTTTACACTACGAGATTTGAAAGGTTGCAAACTCTCTGGAAATATTTTTAGCATTCTCTTCAATCTTAACAAGTTTATGGCATTTGAAACTCGTGATCCATTTCTTATAAAACAGGAGCGTGAAAATCCAACGTTGACAGAGTGGGATCGCTTCGCCCACAGGGAATATATTAGGCTGTCTATGGAGGAGGATGGAGAAGATGCTTCAATTGGCAGTGGAGATGAACCAGAGACATGCTATTGAACATATTGCTGAAATTCTAAATAATCACAGGAGACGCACAGTTTACGAGCCAAATTACTACTAGTCTTTCTTCTTTCATTTTTGTGCGTGCAGGTTTTATTCAACACTGGTACAAAGCTTCTTTCATTTCCATTGAATGCATGCCATCTACAGGCCTTCACTGCAGGAATTGGCTTCATCAGTAATGCCCAGGCAAAGTTAATCAGCCTGATTTCTGCATTCTAGGCCAAATAATAATATGGTAATTCTTACAAAAAAAAAGAAAAAGAAAAAGAAAAATAGTTAATAGAGGAACAAAAATTTGTCTCCATCTTATTTTCATATTAGCCAGTCTTCTCTGTAAAACGATTTCTGAATCCCTTTTTCTCTGCGTAGTTCTCAAATTTTCCCTTCTGATGCTTGCTTTTGCCTTTTTTTTTTTGAGTTTATAAATTTTATTTGCTTTAGATTTATGCAGTGTTGTTATGACATTTTTATTGCATTTTATTATTTAATTCATGTCTTATAATGTAAAAAATGAGAAAATCATTTTTTGAAACTCTCGTCGTTTGTTTATTGGAATAATTACATGTATGGCATGCAAAACTTGTATATTCACATATCTAAAC

Network for GWHGAAEX014956

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.5	EF-hand_7	325	426	4.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11583	PPP2R3	mRNA surveillance pathway	map03015
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.100
SRP064423	SRR2545915	Juvenile tuber	30.650
SRP108465	SRR5643513	five period of Gastrodia elata	28.790
	SRR5643514	five period of Gastrodia elata	29.670
	SRR5643515	five period of Gastrodia elata	31.360
	SRR5643524	five period of Gastrodia elata	29.950
	SRR5643525	five period of Gastrodia elata	35.380
	SRR5643528	five period of Gastrodia elata	36.180
	SRR5643658	five period of Gastrodia elata	34.930
	SRR5643659	five period of Gastrodia elata	32.430
	SRR5643660	five period of Gastrodia elata	34.560
	SRR5643661	five period of Gastrodia elata	28.020
	SRR5643662	five period of Gastrodia elata	37.300
	SRR5643663	five period of Gastrodia elata	31.560
	SRR5643664	five period of Gastrodia elata	31.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.200
SRP279888	Gastro	Gastrodia elata tuber	34.22
	Juven	Juvenile tuber	24.06
	Mother_Gastro	Mother tuber of Gastrodia elata	33.77
	Mother_Juven	Mother tuber of Juvenile	36.07