Gene detail

Detail information of GWHGAAEX014957/evm.TU.scaffold_63.140_evm.TU.scaffold_63.141

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434394192\|ref\|YP_007129139.1\|	7.00E-18	WD-40 repeat-containing protein [Gloeocapsa sp. PCC 7428]
KOG	KOG0266	0	WD40 repeat-containing protein
nr	gi\|672164046\|ref\|XP_008801888.1\|	0	PREDICTED: protein TOPLESS-like [Phoenix dactylifera]
Swissprot	tr\|Q94AI7\|TPL_ARATH	0	Protein TOPLESS
trEMBL	tr\|M0SMK9\|M0SMK9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P09920_001}
TAIR	AT1G15750	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	3062986	3091890	+

Transcript Sequence
>GWHTAAEX014957 CTTTTTTCCCTTTTATATCTTGTCTGAATTAATAAATAATATTCTGAGTGGGATGTATGGGAAGGAGGAAAGGAGAGACTCAACTTTCTGTTGTTTTTTCTGATCTTCTATCTGAAGTCCGATCGATCTCAGCTGATTTCAGTAAGGCATGTGCTTCGATCTATGAGGTGGATTGGATTCAGCGGCGGAAATCCGTGAAATGCGAGGGTTTTATTGAACAAGATCTGGAGGTTTGATTAGGCCTTTTAGGGGGCAGCTGCTGTTGCGATGTCTTCCCTCAGCAGAGAGCTGGTATTTTTGATCTTGCAGTTTCTCGATGAGGAGAAGTTTAAGGAAACAGTCCATAAACTGGAGCAGGAGTCGGGATTTTTCTTCAACATGAAGTATTTTGAGGATGAGGTACATAATGGGAACTGGGATGAGGTGGAGCGCTATCTCTCTGGCTTCACAAAGGTTGATGACAACCGGTACTCCATGAAAATTTTCTTTGAAATAAGGAAGCAGAAGTATCTCGAGGCATTGGATAAGCATGATAGATCCAAGGCTGTTGACATACTTGTGAAGGATTTGAAAGTCTTTGCGTCGTTCAATGAGGAGCTCTTCAAGGAAATTACACAACTCTTGACGCTGGAAAATTTCAGGGAAAATGAGCAACTTTCTAAGTACGGGGATACAAAATCTGCGAGGACTATCATGCTGGTCGAGCTTAAGAAATTAATTGAAGCAAATCCGCTATTCCGAGACAAATTGCAATTCCCAAATCTCAAAAGCTCAAGGCTGCGCACCCTCATTAATCAGAGCTTGAATTGGCAACACCAACTATGCAAAAATCCAAGGCCCAATCCAGATATAAAAACCCTTTTTGTAGATCATTCTTGTGGACAACCAAATGGTGCACATGCTTCATCTCCAGCCAACAATCCACTGCTTGGATCCATGCCAAAAGCAGGAGGTTTCCCTCCGTTAGGCGCACATGGGCCTTTTCAACCCACATCGGCATCTGTTCCAACACCTCTTGCTGGTTGGATGTCAAATTCATCTGCTGTAACTCATCCTGCAATGTCTAGTGGGCCCATGGGACTTAATACTCCTACCAATCCTGCTGCAATTTTGAAGCATCCTAGAACTCCGCCTTCGAACAATCAAGTTGTTGATTATGCTTCTGGAGATTCTGATCACATTTCAAAGAGGACTAGGCCTATTGGAATTCCTGAAGAAGTTAATCTGCCAGTAAATGTGCTGCCCATTTCTTATACTCAGAACCACCAGCAGGCCATATATGCTCCAGATGATTTACCTAAAGTTGTAGCCCGAACACTAAATCAGGGATCGACTCCCATGAGCATGGATTTCCATCCCATTCAGCAAACTATTCTTCTAGTTGGCACAAATGTTGGTGATATTGGACTATGGGAAGTTGGAACAAGGGAGAGACTTGTCCTAAAGAATTTCAAGGTTTGGGAACTTGGGGCTTGCTCAATGCCTCTTCAGACTGCTCTAGTTAAAGATCCAGACGTTTCGGTTAATCGAATAATATGGAGTCCTGATGGGAATTTGTTTGGTGTTGCTTATTCAAAACATATTGTACAAGTATATTCTTATCATGGTGGTAACGATGTTAGACAGAATTTTGAGATTGATGCCCATATCGGAGGTGTCAATGATATTGCATTTTCAACACCCAAAAAGCAACTTTGCATAGTAACTTGCGGTGATGATAAGTTAATTAAGGTATGGGATGCAACTACAGGGGCCAAGCAGTACACATTTGAAGGTCATGAAGCACCTGTATATTCTGTTTGTCCTCATCACAAGGAGAACATTCAGTTTATTTTTTCTACGGCATTGGATGGAAAAATAAAAGCATGGTTATATGATAATCTGGGATCAAGAGTAGATTACGATGCCCCAGGTCATTGGTGCACAACTATGGCATATAGTGCCGATGGTTCAAGACTGTTCTCTTGTGGAACAAGCAAAGAAGGGGAATCACATATTGCAGAGTGGAATGAAACTGAAGGGGCCGTGAAAAGGACTTACCAAGGATTTCGTAAACGTTCTTTGGGCGCTGTACAGTTTGATACAACCAGGAATAGATTTTTGGCAGCCGGGGATGATTTCTTAATAAAATTTTGGGACATGGACAACACTAATCTTTTAACTACTTGTGAAGCCGAGGGCTCTCTCCCCGCTAGTCCCAAGATACGCTTCAACAGAGAGGGTACCTTGTTTGCTGTTTCTACGCATGATAATGGAATTAAAATATTAGCTAATACTGATGGATTGCGTTTGCTGCGCACATTTGAAAATCGTTCTTTAGATGTTTCAAGGACCATTTCAGAAACCATGACCAAGCCTATTATAAATCCATTATCTGCTGCCATCACTGCTGCAACTGCCACTGTGGTCAGTGCGACAATGAGTGATAGACCTGCTACTTCAGGGATTACAACTGGAATGAATGGGGAGAACCGAAACTTGGCGGATGTGAAACCAAGAATAACTGATGAGTCTATGGAGAAGTCAAAGATTTGGAAGCTCACTGAAGTTAGTGATTCAGCTCATTGTCGATCTTTGCGGCTGATGGATAACCTGAGACCAATCAAGATACAAAGATTAATTTATACAAATTCCGGTATTGCGTTGTTGGCTTTAGCATCTAATGCCATTCATCTTCTTTGGAAATGGCCACGAAATGAAAAAAATTCTAGTGGAAAGGCCACAACGAATGTTGCTCCTCAGCTATGGCAACCCCCAAGTGGCATATTGATGACCAATGATACAACCGACACGAAGCCTGAAGAAACGGTCCCTTGCTTTGCTTTGTCAAAGAATGATTCATATGTTATGTCTGCATCAGGAGGCAAGATTTCTCTGTTTAATATGATGACATTCAAGACCATGACAACTTTTATGCCTCCACCACCTGCTGCGACGTTTTTGGCATTCCATCCTCAAGATAACAACATAATAGCAATCGGAATGGATGACTCAACCATCCAAATATATAATGTGCGAGTCGATGAGGTTAAAAGCAAACTTAGAGGGCACACAAAGAGAATTACCGGCCTTGCCTTCTCGCATCCATTGAATGTGCTCGTCTCATCTGGCGCCGATGCTCAGCTTTGTATATGGGGTACTGATGGGTGGGACAAGCTGAGGAGTAGGTTTTTGCAAGTTCCACCTGGACGAGCGTCTAATGCAGTTTCAGATACTCGTGTGCAGTTTCACCAGGATCAGATTCACTTTCTTGTTGTGCATGAGACACAGATCGCTGTGTACGAGGCTAATAAGCTGGATTGTGTGAGGCAGTGGGCGACTCGTGAATCATCTCCTCCTATCTCCCATGCTACATTTTCTTGTGATAGTCAACTGATATTTGCAAGCTTTTTGGATGCCACTGTGTGCATATTTAATGGCGCAAACCTCCGACTTCGATGCCGAATTAATCCCACAGCTTATCTTCCCTCTGACATCAGCTCAAATGTCTATCCCCTTGTTGTTGCTGCACATCCATCAGAGCCAAATCAGTTTGCATTAGGGCTGACAGATGGGGGCGTTCATGTGCTGGAGCCCCTCGAATCTGAGGGTAAATGGGGCATTGCCCCGCCAACAGAGAATGGCTCAAGTAGCAGTATGCCTTTAACCGCTCCAACTGGAACTTCAGCTTCAGATCAACAGCGATGA

Network for GWHGAAEX014957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	457	491	0.0026
PF00400.31	WD40	924	956	0.0091

Protein Sequence

>GWHPAAEX014957
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFASFNEELFKEITQLLTLENFRENEQLSKYGDTKSARTIMLVELKKLIEANPLFRDKLQFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGAHASSPANNPLLGSMPKAGGFPPLGAHGPFQPTSASVPTPLAGWMSNSSAVTHPAMSSGPMGLNTPTNPAAILKHPRTPPSNNQVVDYASGDSDHISKRTRPIGIPEEVNLPVNVLPISYTQNHQQAIYAPDDLPKVVARTLNQGSTPMSMDFHPIQQTILLVGTNVGDIGLWEVGTRERLVLKNFKVWELGACSMPLQTALVKDPDVSVNRIIWSPDGNLFGVAYSKHIVQVYSYHGGNDVRQNFEIDAHIGGVNDIAFSTPKKQLCIVTCGDDKLIKVWDATTGAKQYTFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGHWCTTMAYSADGSRLFSCGTSKEGESHIAEWNETEGAVKRTYQGFRKRSLGAVQFDTTRNRFLAAGDDFLIKFWDMDNTNLLTTCEAEGSLPASPKIRFNREGTLFAVSTHDNGIKILANTDGLRLLRTFENRSLDVSRTISETMTKPIINPLSAAITAATATVVSATMSDRPATSGITTGMNGENRNLADVKPRITDESMEKSKIWKLTEVSDSAHCRSLRLMDNLRPIKIQRLIYTNSGIALLALASNAIHLLWKWPRNEKNSSGKATTNVAPQLWQPPSGILMTNDTTDTKPEETVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLRGHTKRITGLAFSHPLNVLVSSGADAQLCIWGTDGWDKLRSRFLQVPPGRASNAVSDTRVQFHQDQIHFLVVHETQIAVYEANKLDCVRQWATRESSPPISHATFSCDSQLIFASFLDATVCIFNGANLRLRCRINPTAYLPSDISSNVYPLVVAAHPSEPNQFALGLTDGGVHVLEPLESEGKWGIAPPTENGSSSSMPLTAPTGTSASDQQR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.850
SRP064423	SRR2545915	Juvenile tuber	74.360
SRP108465	SRR5643513	five period of Gastrodia elata	48.720
	SRR5643514	five period of Gastrodia elata	41.710
	SRR5643515	five period of Gastrodia elata	42.340
	SRR5643524	five period of Gastrodia elata	38.950
	SRR5643525	five period of Gastrodia elata	46.310
	SRR5643528	five period of Gastrodia elata	29.280
	SRR5643658	five period of Gastrodia elata	38.030
	SRR5643659	five period of Gastrodia elata	62.320
	SRR5643660	five period of Gastrodia elata	65.930
	SRR5643661	five period of Gastrodia elata	57.590
	SRR5643662	five period of Gastrodia elata	68.230
	SRR5643663	five period of Gastrodia elata	61.180
	SRR5643664	five period of Gastrodia elata	63.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.510
SRP279888	Gastro	Gastrodia elata tuber	61.11
	Juven	Juvenile tuber	93.70
	Mother_Gastro	Mother tuber of Gastrodia elata	49.13
	Mother_Juven	Mother tuber of Juvenile	71.99