Gene detail

Detail information of GWHGAAEX014977/evm.TU.scaffold_63.164

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672159122\|ref\|XP_008799315.1\|	9.41E-141	PREDICTED: uncharacterized protein LOC103714000 [Phoenix dactylifera]
trEMBL	tr\|M0SA98\|M0SA98_MUSAM	6.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P22570_001}
TAIR	AT5G38690	6.00E-108	Zinc-finger domain of monoamine-oxidase A repressor R1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	3399991	3406462	-

Transcript Sequence
>GWHTAAEX014977 CATCCGCCCTTTTTCTTCTTCGCTGAAGAATCCAAGAAGGTTTTCCACCATCGTCCATGGCCGTTCCCCCAAGTTCGCCGGCAGGCGGCCGCAGAAAGGCGGAGAAAATCGAGAACAAGAACACAATCGACACGTCTCCAGCAAAGCGCTCTAAGAATCCCGGGATTCGAGTCCAGGGAGGGCGGATCTACGACTCGGAGAACGGGAAGACTTGTCATCAGTGCCGGCAGAAGACCATGGATTTTGCTGCATCCTGCAAGGCCATGAGAAGTGAAAAGCCTTGCACGATCAAGTTCTGCCACAAATGTCTTCTTAACAGATACGGAGAGAAGGCCGAGGAAGTTTCTGCTGCTGTTGATTGGAAGTGCCCTAAATGCAGGGGAGTCTGCAACTGCAGCTTTTGCATGAAGCGAAAGGGTGAACAGCCAACCGGGATTCTCGCATATACAGCCAAACTTACTGGGTTTTCATCAGTTCATGATTTGTTATGTAGAGGTGAAAATGTGCTAAGACATGCTGTTGCTCTAACGAAGAAAGTCCCTGATTCAAAAACGTCGTTAGTGCCGTCAAAAAGATCCAGGGACAAAGAAAATCGCAATGTTGAAAAGAATAGTTACGTCAGCATTGAAGCTGATTTTGCCAAGAAGGGATCTCTCTCCGAGATCAAAGATGCAAAATCATCGAAGAAACTAAAGCAGACAATTCTCAAGGTTGAACACAAGACTGAAGTGGTTTCAAAAGAGAATAAGTCTCAGATCAATAATTCAGGAAAAGAGTTACCTGCAAAAGCAGGTAACAAGGAAAACTTGAACGGAATTATTAAGAATGATGAATTTGTAAAACCTCCCAAGCAGAAAGGACGGCCACATAAAATTGTTACAATGCCTATTCGTCCTGTTGAGAAACCCATGAAGTTGATTGCCGGTGTTGGTCTTCCTGATGAAGATATTGGCTTTGCATTGCAGTTTTTGGAATTTTGTTCTGTGTTTTCGAAGGTTTTTGATATAAAGAAAGGCGAACCCGAAGCAATTATCAGAGAACTGGCGAGAGGTTCCCTCTTACTTCGCCGTTCCCGAGTTACTTCTGCAATGATTCGATTCAAAATGAGATTGCTCTCCTTAATCTTAGAAGAGCCTTGTTTAGAAACCGAAGGTGAAAATTCATGGTTAAAAGGTCTCAGCAAATGCCTCAGCCAATATAAGCATCTCACAACGGGCCTGCCTCTGGATTTCATTGGCAGCAACCCATCTAAATACCACACATTGGACTCGTCAATTAAGCTAAGGATCCTAGTGTTTCTCTGTGACGAGGCTCTTGGCACCGATGAACTGAGGAATTTTCTTGATGAAGAGAATGCAAAGTTTGCTGAGGAGAGGAAAGAAAGGAAAGAGCAAGTTGTTGCTGCTAAAACAAAGGAGAAACTGATCAAGCAGACTCTTAAAAATGATCTAGCTAAAGCAATGCTTCCTACAGAAGGGGCTGCTCAGCTTTCCATATCTGCTCATGAAGAGCTCATTTCAAAAATAAGGCAGGAAACTGAAAGGGCTCGTCAGGAGATGCTGGAATCTGTTGAGCAATTGCCAAAGAAGAAGCATGGTCCCGATGCCGTTCGAACCAGCCCTCTATTTCTTGAAAAGGATGGAGTCTTGTTCTGGAGATTGAGGAGTTACGGCCGAAGTTCAAGCATTATGCTGCAAGATAGTGTAGAGAATGGGAGTGACAAGTGGTTCATATTCGATGATGAAGATCAAGGGATGATTGAGAAATACATTTCTTCTCAGAGGTCTAGCAGAGCGAAGGAACACAAGGAACTTGTGAAAAATGCCCAAGGAGGCGCTCTTGGGATAAAGAATGAATCCAGTAGTAACGCAGAACCATAAAATTGCTTTGCAGAAGTGGAGTGAAAGGGTCAGCAGAAAGCTCTGAAGCAGTTGCTCATCAGTATTCATAGCAGTAGTAGCAAAGTTTAGCTGAAGCCATTCCAGTGAATTTATGCGCCTTTTTATTTTATATTATAATTTTTTTTGGTAATGGGCCTCTTTTCATTCTTTTTTAGTGGGCCCTCACAATTATCTGATTCATCAATGTCTTTTTTTTCTTCTTAAGATTAGATATTTTTAATGTTTATATATGTTTATGATTCTAAAATGATCTTCATTGCACAAATCTTTATTAGTGG

Network for GWHGAAEX014977

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10497.8	zf-4CXXC_R1	45	144	5.60E-36
PF15612.5	WHIM1	400	430	6.10E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.770
SRP064423	SRR2545915	Juvenile tuber	2.040
SRP108465	SRR5643513	five period of Gastrodia elata	6.330
	SRR5643514	five period of Gastrodia elata	6.490
	SRR5643515	five period of Gastrodia elata	3.300
	SRR5643524	five period of Gastrodia elata	3.900
	SRR5643525	five period of Gastrodia elata	0.310
	SRR5643528	five period of Gastrodia elata	4.080
	SRR5643658	five period of Gastrodia elata	0.730
	SRR5643659	five period of Gastrodia elata	1.790
	SRR5643660	five period of Gastrodia elata	1.500
	SRR5643661	five period of Gastrodia elata	1.200
	SRR5643662	five period of Gastrodia elata	0.570
	SRR5643663	five period of Gastrodia elata	1.810
	SRR5643664	five period of Gastrodia elata	0.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.560
SRP279888	Gastro	Gastrodia elata tuber	0.33
	Juven	Juvenile tuber	1.04
	Mother_Gastro	Mother tuber of Gastrodia elata	1.25
	Mother_Juven	Mother tuber of Juvenile	0.58