Detail information of GWHGAAEX014983/evm.TU.scaffold_63.172
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|385809238|ref|YP_005845634.1| | 1.00E-31 | peptidyl-prolyl cis-trans isomerase A [Ignavibacterium album JCM 16511] |
| KOG | KOG0415 | 0 | Predicted peptidyl prolyl cis-trans isomerase |
| nr | gi|743823241|ref|XP_010932480.1| | 0 | PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q6Q151|CYP59_ARATH | 0 | Peptidyl-prolyl cis-trans isomerase CYP59 |
| trEMBL | tr|M0XCH8|M0XCH8_HORVD | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_58863.1} |
| TAIR | AT1G53720 | 0 | cyclophilin 59 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 3499634 | 3547223 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014983
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00160.20 | Pro_isomerase | 4 | 161 | 2.90E-40 |
| PF00076.21 | RRM_1 | 246 | 316 | 5.50E-16 |
| PF00098.22 | zf-CCHC | 340 | 354 | 7.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000413 | Biological Process | protein peptidyl-prolyl isomerization |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003755 | Molecular Function | peptidyl-prolyl cis-trans isomerase activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.710 |
| SRR2545915 | Juvenile tuber | 38.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.670 |
| SRR5643514 | five period of Gastrodia elata | 28.050 | |
| SRR5643515 | five period of Gastrodia elata | 27.860 | |
| SRR5643524 | five period of Gastrodia elata | 32.670 | |
| SRR5643525 | five period of Gastrodia elata | 21.880 | |
| SRR5643528 | five period of Gastrodia elata | 18.080 | |
| SRR5643658 | five period of Gastrodia elata | 23.490 | |
| SRR5643659 | five period of Gastrodia elata | 42.110 | |
| SRR5643660 | five period of Gastrodia elata | 39.980 | |
| SRR5643661 | five period of Gastrodia elata | 42.240 | |
| SRR5643662 | five period of Gastrodia elata | 37.860 | |
| SRR5643663 | five period of Gastrodia elata | 39.850 | |
| SRR5643664 | five period of Gastrodia elata | 41.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.07 |
| Juven | Juvenile tuber | 58.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.36 | |
| Mother_Juven | Mother tuber of Juvenile | 53.01 |