Detail information of GWHGAAEX014998/evm.TU.scaffold_63.189
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743772937|ref|XP_010916791.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g46460, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9FHF9|PP419_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g46460, mitochondrial (Precursor) |
| trEMBL | tr|A0A061GEI5|A0A061GEI5_THECC | 0 | Pentatricopeptide repeat (PPR) superfamily protein {ECO:0000313|EMBL:EOY27823.1} |
| TAIR | AT5G46460 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 3971742 | 3974123 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014998
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 62 | 88 | 0.0072 |
| PF12854.6 | PPR_1 | 119 | 147 | 2.50E-06 |
| PF12854.6 | PPR_1 | 153 | 178 | 2.60E-06 |
| PF13041.5 | PPR_2 | 182 | 229 | 1.60E-07 |
| PF13041.5 | PPR_2 | 333 | 380 | 5.90E-11 |
| PF01535.19 | PPR | 410 | 432 | 0.31 |
| PF14432.5 | DYW_deaminase | 506 | 630 | 1.20E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.510 |
| SRR2545915 | Juvenile tuber | 0.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.050 |
| SRR5643514 | five period of Gastrodia elata | 1.300 | |
| SRR5643515 | five period of Gastrodia elata | 0.980 | |
| SRR5643524 | five period of Gastrodia elata | 1.130 | |
| SRR5643525 | five period of Gastrodia elata | 0.330 | |
| SRR5643528 | five period of Gastrodia elata | 0.070 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 1.230 | |
| SRR5643660 | five period of Gastrodia elata | 1.150 | |
| SRR5643661 | five period of Gastrodia elata | 1.460 | |
| SRR5643662 | five period of Gastrodia elata | 1.270 | |
| SRR5643663 | five period of Gastrodia elata | 1.190 | |
| SRR5643664 | five period of Gastrodia elata | 0.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.75 |
| Juven | Juvenile tuber | 1.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.46 | |
| Mother_Juven | Mother tuber of Juvenile | 0.62 |