Gene detail

Detail information of GWHGAAEX015004/evm.TU.scaffold_63.199_evm.TU.scaffold_63.198

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428203976\|ref\|YP_007082565.1\|	1.00E-40	putative GTPase, G3E family [Pleurocapsa sp. PCC 7327]
KOG	KOG2743	4.00E-25	Cobalamin synthesis protein
nr	gi\|672122205\|ref\|XP_008784425.1\|	0	PREDICTED: uncharacterized protein LOC103703366 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0RE43\|M0RE43_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P00160_001}
TAIR	AT1G80480	4.00E-25	plastid transcriptionally active 17

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	4076137	4158883	-

Transcript Sequence
>GWHTAAEX015004 CAAATTAACAATAAACAACTACAAAAAAAAATAGTAGAACATACTCTAAAAGTCATAATAGCTATACTACTATACTCACTGCAATAGATAATAACAACTTTATTCTGATTTGTAGCTCAAACATAGATTGATTTCGGTCCCAATTATGGATTGTTTGCTCCCATGTTACAAGCCATAAAGAAAACCAAGCTTTTACCGAAAATAGAGGTGTTTTGAGCTCGGATTGGCTCACCTTCTTGTTCGACACCACGAAGGGTATGTCAGAACTAGCAAGTTTCGGTCAAAAATTATCGATGCAAACAAACAGATTCATTCATCTCTTAATTTTCAAACTCTGCAAATTTTATTACATTGAATCTGCAATCCCAAAATTTTGTGAACTGTTCAACCTCCAAAGCCCAGCTGAGTGTTTTGGGGAATCCTGCAACAACTGAGACAGAAATGGAGGGGAACCAAATGAGCTTCGCTTTTGAGAATCGAGTGTTCAACCGCCATTCCGGCCTCGGCGGCGGCCGCATGGGCTGCACTCTTGTCACCGGATTTCTCGGAAGCGGCAAGACCACTCTTCTCCGCCATCTCCTCGATCATCGCTCCGATCTTCGCCTCGCCCTGCTCGTCAACGAGTTCGCTGACTCTGACGTCGATTCCCTCCTCCTCGATTCCACTCGCATCAACTCCGCCTTTAACCTCTCCACCGTCGCCCTCACGCACGGCTGCGCCTGCTGCGATGTGCGTGGGCCGTTCCGAGAATCGCTGCAGAGGATAGTTGACAGCAGACACAACTTCGATTGCTTGCTCGTCGAGACGTCTGGGCTGGCGGAACCGGATGATTTTGTCGCCGAGCTTGAGCAAGTTGGGATAAATTTGAACCTTGTTGTTGCTGTAGTGGATGCTGAGTCGCTAGAAAAGATTATTAAGTTGGATATTGTTAAGAAGCAATTGGAGCGAGTAGATCTTGTGCTGTTGAACAAGTGTGATCTGGCTACTCTTAGTCAAGTTTCTGATGCAGAAGACACCCTTCGACAAGTGACAGGGGGAGCAAAAGTAGTTCGCTCTCAGTTTTGCAAGGTTCCACTTGATCTCGTTATTGATTGTAGCAGAATTAAAGCAATAAATGTGGCAAAGGAAGATTGCAGTATCCCTGTTTTATCCCATGAACCTTTGCCCAAGATGGCATTTCGAGGGGATATAATTGGAAATCCCTTATTGCATATTACTTCTAGCATTGCAGATTTGCCTTTGGCTGATGATTATAGAGATGATTCCAAAACTCTACAACATGGTTTACCTCTAAATGTTTCTTTCTCGTCTGTTACCTTTGAAAGTGAGACTCCCTTGTCATTGTCATTATTTCAGTCAAAAGTTTTGAGAAGTGTCAGCAACACAGTTGGTCTTCTCAGGGCTAAAGGCATAGTATACTTCTCCGAAGATAAGGGAAGTCGCTTTGTATTCCAATGGAGTGGGCTTAAAAGGGTAGAAGCTGTCAGTGGACGACCATGGGAAAATGCACCAAAGACTTGCCTTGTGTTTATTGGGCATGATAAACCTGAACTTGATGATCTTATTGCTCAGATGTCACAAATTCTGTGTCCTCTTCCCAAATCATCCGAAGAAAATCATATTAGCAAAGAATATGCAAGAATCTTTAGCATGAAAGTTGGAGCAGATGGGAGATTTAAGAATCCTGTCCTTCAAAAGGAGTCGTCACTTGTTGTATTTGGTTTAAAGGGTTCACCATTACGTGGAATAAAAGAGTCACATTTAAGCGGAGCTCTTATGCGAGTTGTTAACGGCCAAGGCAATATATTTCTTACAGCAACAGTTTCTGGAGAAGAATACAATTTGCAGCTTCTGTTTACTGAAGGATCTGACCCAGATAAAGCATGGAATCAAATTCGGCTTGCTGCTAGTGCAGTTATCTCCAAGTTATGCAAAAATTTCTGTCCATGCAGATCGGAACTTACTGCTCATGTTCGTTGAAGCTGAAAATAATGCAAACTATATATATATATATATATATATATCTGGCAGGAGACAGCTTCAGTAACTTTATTTTACTAAGTGTGCATTCACGCATGTTCAAATTCATAGGATGATATGGAGTTTCCTGCTAACACCCAGAACTTGCATATTTGCAGAATCGCTATTTTATACTTCTTATGTTTAATAACAGTACTCATTTTGAAGAGCACAAAAAAAAACCAATAGCAGCAAAGCAGCCATAATCCACTAACTGAGATCGGCTACCTGAACCATTTGTTTTTATTGCGAACCTTTCTTTAGCTGTTAAGAATGTTACATTATTTCTACAAGTTTCTTGTCATGTTTGGTCTTCTTTTTCATCTTTTAACGTAGGCAAGCTTCATTATCCCAACTTTCCTCATAGAGACATTCTTTACACTTAATATGCTTAAATTATGTAGAACCGTTCTATAGTTTATCCTCAATTGGAGCTATCCTAACCTTCTACAAATATACTCATTTCTTCATCTTATCTCATCCGCCTTAGCACTCTCATCTCTTTAATACTTCATCTATATATATTCTTCAATTTAGCGAGCCAACATTTGATCCCACCTAGCATTGTTATTTTATAATTGCTCTATAAAACTTCTTAAATTTGTGTGAAAATTTTCAATTGCAAAACACTCATAAGAGCTCCTCCATTTCATTAAACCTACTTGGATTCTGTTGCACATCACTCTTTAATTTTCCAATATTTTGTATGATTCAATTTAGATATTTGAATCCATTGTTAAGTGGCATTCTTGCTATTTAGTTGTTATTATGATTACACTTTAGTTTCTATTATGTTTTAGATCTAAGACAAAAATCCTTATACTCTAGGATTGCTCTTCATAACTCAGAGTTTCACTTCAACCCTAACTCCTATTTTATTAATACAAAGAATATCATCTACAAATAGCATGGACCAAAGCATCTCTTTTTGATGTGTTTAATAAGGGCATCTATAATTAATGAAAAAGATTTAGACTTAAAGTTGATCCCTTATGCAATACAGTTGAAAGAGGATCAATTGACAAATATTTAAAAACATTTATTATGTCTTTTCTAAATTGATGTATATAATGATAGAGATCTTTTCTGAATCCAAAATTCCCTTTTACACTTCTTAGCAAATGCATAGTCTCTATATTGTCAATATATTTAGCATAAAATCAAATAGATTATGTCAAAATTTGCATCTCATCACAATTTGGATTAAATCGTTCTTCAAAGCATGACACATTTGCATCTCATAGCAATTTGGATTAAATCGCTCTTCAAAGCATGACTCGTTAACTTAGTTCTTCTATAGTTTGCATAATCATGCACATCACCATTTTCCTTATAAATATGAATCATAATACACTGCACAGCTAGTTTTTTTAAGTTCTTAAAATTGTGTTATATAACTTTGCAAGCCAAGAAACTATGTATTTGAACATATCCACACTTTAATTGAGATGGTATTTGATCCTTTAGCTTTCTGTAATAGCTCATATTTTGGCAACTACTATGGTATTGTACATTTGTCTTATAAACGCT

Network for GWHGAAEX015004

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02492.18	cobW	29	203	5.50E-41
PF07683.13	CobW_C	288	368	4.10E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.760
SRP064423	SRR2545915	Juvenile tuber	18.290
SRP108465	SRR5643513	five period of Gastrodia elata	15.930
	SRR5643514	five period of Gastrodia elata	15.080
	SRR5643515	five period of Gastrodia elata	16.230
	SRR5643524	five period of Gastrodia elata	15.700
	SRR5643525	five period of Gastrodia elata	12.090
	SRR5643528	five period of Gastrodia elata	7.950
	SRR5643658	five period of Gastrodia elata	11.140
	SRR5643659	five period of Gastrodia elata	15.720
	SRR5643660	five period of Gastrodia elata	16.700
	SRR5643661	five period of Gastrodia elata	14.320
	SRR5643662	five period of Gastrodia elata	12.770
	SRR5643663	five period of Gastrodia elata	16.510
	SRR5643664	five period of Gastrodia elata	13.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.320
SRP279888	Gastro	Gastrodia elata tuber	15.04
	Juven	Juvenile tuber	18.65
	Mother_Gastro	Mother tuber of Gastrodia elata	20.56
	Mother_Juven	Mother tuber of Juvenile	17.83