Detail information of GWHGAAEX015016/evm.TU.scaffold_63.217
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294507722|ref|YP_003571780.1| | 6.00E-131 | acyl-CoA oxidase [Salinibacter ruber M8] |
| KOG | KOG0135 | 0 | Pristanoyl-CoA/acyl-CoA oxidase |
| nr | gi|743771504|ref|XP_010916040.1| | 0 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Elaeis guineensis] |
| Swissprot | tr|P0CZ23|ACOX3_ARATH | 0 | Acyl-coenzyme A oxidase 3, peroxisomal (Precursor) |
| trEMBL | tr|M0S864|M0S864_MUSAM | 0 | Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168} |
| TAIR | AT1G06290 | 0 | acyl-CoA oxidase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 4541773 | 4569453 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015016
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02770.18 | Acyl-CoA_dh_M | 194 | 302 | 4.10E-13 |
| PF00441.23 | Acyl-CoA_dh_1 | 335 | 487 | 2.70E-05 |
| PF01756.18 | ACOX | 540 | 663 | 2.20E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006635 | Biological Process | fatty acid beta-oxidation |
| GO:0006631 | Biological Process | fatty acid metabolic process |
| GO:0003997 | Molecular Function | acyl-CoA oxidase activity |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0005777 | Cellular Component | peroxisome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 75.980 |
| SRR2545915 | Juvenile tuber | 86.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 93.110 |
| SRR5643514 | five period of Gastrodia elata | 86.280 | |
| SRR5643515 | five period of Gastrodia elata | 72.070 | |
| SRR5643524 | five period of Gastrodia elata | 95.110 | |
| SRR5643525 | five period of Gastrodia elata | 91.280 | |
| SRR5643528 | five period of Gastrodia elata | 88.780 | |
| SRR5643658 | five period of Gastrodia elata | 101.920 | |
| SRR5643659 | five period of Gastrodia elata | 61.560 | |
| SRR5643660 | five period of Gastrodia elata | 57.070 | |
| SRR5643661 | five period of Gastrodia elata | 59.630 | |
| SRR5643662 | five period of Gastrodia elata | 48.280 | |
| SRR5643663 | five period of Gastrodia elata | 54.350 | |
| SRR5643664 | five period of Gastrodia elata | 47.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 98.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 91.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 100.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 95.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 91.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 96.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 95.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 106.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 118.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 97.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 112.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 112.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 55.24 |
| Juven | Juvenile tuber | 93.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 70.85 | |
| Mother_Juven | Mother tuber of Juvenile | 77.55 |