Detail information of GWHGAAEX015018/evm.TU.scaffold_63.219
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-50 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695065755|ref|XP_009421476.1| | 0 | PREDICTED: receptor-like protein kinase HSL1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SGP2|HSL1_ARATH | 0 | Receptor-like protein kinase HSL1 (Precursor) |
| trEMBL | tr|A0A067GGE5|A0A067GGE5_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO77710.1} |
| TAIR | AT1G28440 | 0 | HAESA-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 4658622 | 4678508 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015018
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 28 | 67 | 5.30E-10 |
| PF13855.5 | LRR_8 | 122 | 181 | 5.10E-07 |
| PF00560.32 | LRR_1 | 195 | 217 | 1.4 |
| PF00560.32 | LRR_1 | 243 | 265 | 1.7 |
| PF13855.5 | LRR_8 | 460 | 519 | 1.30E-06 |
| PF00069.24 | Pkinase | 646 | 861 | 1.50E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.870 |
| SRR2545915 | Juvenile tuber | 30.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.190 |
| SRR5643514 | five period of Gastrodia elata | 33.950 | |
| SRR5643515 | five period of Gastrodia elata | 37.510 | |
| SRR5643524 | five period of Gastrodia elata | 36.080 | |
| SRR5643525 | five period of Gastrodia elata | 48.140 | |
| SRR5643528 | five period of Gastrodia elata | 41.720 | |
| SRR5643658 | five period of Gastrodia elata | 69.010 | |
| SRR5643659 | five period of Gastrodia elata | 33.500 | |
| SRR5643660 | five period of Gastrodia elata | 43.550 | |
| SRR5643661 | five period of Gastrodia elata | 41.590 | |
| SRR5643662 | five period of Gastrodia elata | 32.250 | |
| SRR5643663 | five period of Gastrodia elata | 36.100 | |
| SRR5643664 | five period of Gastrodia elata | 38.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.85 |
| Juven | Juvenile tuber | 34.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.30 | |
| Mother_Juven | Mother tuber of Juvenile | 21.09 |