Detail information of GWHGAAEX015023/evm.TU.scaffold_63.230
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743755569|ref|XP_010912181.1| | 0 | PREDICTED: auxin response factor 11 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9ZPY6|ARFK_ARATH | 0 | Auxin response factor 11 |
| trEMBL | tr|F6I6F3|F6I6F3_VITVI | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT2G46530 | 0 | auxin response factor 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 5034045 | 5038213 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015023
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 111 | 212 | 1.00E-20 |
| PF06507.12 | Auxin_resp | 237 | 316 | 2.20E-30 |
| PF02309.15 | AUX_IAA | 508 | 566 | 2.40E-07 |
| PF02309.15 | AUX_IAA | 571 | 620 | 3.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14486 | K14486, ARF | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009725 | Biological Process | response to hormone |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.530 |
| SRR2545915 | Juvenile tuber | 35.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.670 |
| SRR5643514 | five period of Gastrodia elata | 36.440 | |
| SRR5643515 | five period of Gastrodia elata | 47.170 | |
| SRR5643524 | five period of Gastrodia elata | 37.260 | |
| SRR5643525 | five period of Gastrodia elata | 43.670 | |
| SRR5643528 | five period of Gastrodia elata | 47.920 | |
| SRR5643658 | five period of Gastrodia elata | 59.650 | |
| SRR5643659 | five period of Gastrodia elata | 46.240 | |
| SRR5643660 | five period of Gastrodia elata | 48.420 | |
| SRR5643661 | five period of Gastrodia elata | 44.810 | |
| SRR5643662 | five period of Gastrodia elata | 41.240 | |
| SRR5643663 | five period of Gastrodia elata | 32.390 | |
| SRR5643664 | five period of Gastrodia elata | 43.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 55.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 50.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 63.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.51 |
| Juven | Juvenile tuber | 29.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 89.16 | |
| Mother_Juven | Mother tuber of Juvenile | 77.22 |