Detail information of GWHGAAEX015025/evm.TU.scaffold_64.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|407647558|ref|YP_006811317.1| | 8.00E-10 | protein kinase [Nocardia brasiliensis ATCC 700358] |
| KOG | KOG1240 | 0 | Protein kinase containing WD40 repeats |
| nr | gi|743857504|ref|XP_010942131.1| | 0 | PREDICTED: probable serine/threonine-protein kinase vps15 [Elaeis guineensis] |
| Swissprot | tr|Q84M93|MPK17_ARATH | 2.00E-10 | Mitogen-activated protein kinase 17 |
| trEMBL | tr|F6HGX9|F6HGX9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51477.1} |
| TAIR | AT4G29380 | 0 | protein kinase family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 57678 | 128208 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015025
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 30 | 293 | 2.80E-23 |
| PF02985.21 | HEAT | 541 | 567 | 0.0013 |
| PF00400.31 | WD40 | 1106 | 1142 | 1.50E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_Pl-Tthe |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08333 | PIK3R4, VPS15 | Apelin signaling pathway | map04371 |
| Autophagy - animal | map04140 | ||
| Autophagy - yeast | map04138 | ||
| Autophagy - other | map04136 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.960 |
| SRR2545915 | Juvenile tuber | 25.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.790 |
| SRR5643514 | five period of Gastrodia elata | 12.020 | |
| SRR5643515 | five period of Gastrodia elata | 11.500 | |
| SRR5643524 | five period of Gastrodia elata | 13.230 | |
| SRR5643525 | five period of Gastrodia elata | 14.300 | |
| SRR5643528 | five period of Gastrodia elata | 13.420 | |
| SRR5643658 | five period of Gastrodia elata | 13.630 | |
| SRR5643659 | five period of Gastrodia elata | 11.540 | |
| SRR5643660 | five period of Gastrodia elata | 12.870 | |
| SRR5643661 | five period of Gastrodia elata | 11.550 | |
| SRR5643662 | five period of Gastrodia elata | 11.240 | |
| SRR5643663 | five period of Gastrodia elata | 11.310 | |
| SRR5643664 | five period of Gastrodia elata | 11.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.19 |
| Juven | Juvenile tuber | 29.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.41 | |
| Mother_Juven | Mother tuber of Juvenile | 38.00 |