Detail information of GWHGAAEX015035/evm.TU.scaffold_64.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20807804|ref|NP_622975.1| | 3.00E-89 | DNA mismatch repair protein MutS [Thermoanaerobacter tengcongensis MB4] |
| KOG | KOG0219 | 0 | Mismatch repair ATPase MSH2 (MutS family) |
| nr | gi|743771694|ref|XP_010916139.1| | 0 | PREDICTED: DNA mismatch repair protein MSH2 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9XGC9|MSH2_MAIZE | 0 | DNA mismatch repair protein MSH2 |
| trEMBL | tr|D7SIV1|D7SIV1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI15412.3} |
| TAIR | HS4557761 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 519753 | 577234 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015035
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01624.19 | MutS_I | 64 | 169 | 2.50E-15 |
| PF05188.16 | MutS_II | 195 | 324 | 4.20E-18 |
| PF05192.17 | MutS_III | 340 | 647 | 8.50E-30 |
| PF05190.17 | MutS_IV | 509 | 605 | 5.50E-21 |
| PF00488.20 | MutS_V | 703 | 901 | 3.40E-78 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08735 | MSH2 | Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006298 | Biological Process | mismatch repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0030983 | Molecular Function | mismatched DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.610 |
| SRR2545915 | Juvenile tuber | 23.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.770 |
| SRR5643514 | five period of Gastrodia elata | 13.670 | |
| SRR5643515 | five period of Gastrodia elata | 11.960 | |
| SRR5643524 | five period of Gastrodia elata | 12.620 | |
| SRR5643525 | five period of Gastrodia elata | 20.280 | |
| SRR5643528 | five period of Gastrodia elata | 15.200 | |
| SRR5643658 | five period of Gastrodia elata | 18.490 | |
| SRR5643659 | five period of Gastrodia elata | 14.530 | |
| SRR5643660 | five period of Gastrodia elata | 15.050 | |
| SRR5643661 | five period of Gastrodia elata | 13.600 | |
| SRR5643662 | five period of Gastrodia elata | 15.830 | |
| SRR5643663 | five period of Gastrodia elata | 17.870 | |
| SRR5643664 | five period of Gastrodia elata | 16.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.61 |
| Juven | Juvenile tuber | 19.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.78 | |
| Mother_Juven | Mother tuber of Juvenile | 15.56 |