Detail information of GWHGAAEX015036/evm.TU.scaffold_64.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357393893|ref|YP_004908734.1| | 1.00E-98 | putative endoglucanase precursor [Kitasatospora setae KM-6054] |
| nr | gi|743766336|ref|XP_010913407.1| | 0 | PREDICTED: endoglucanase 11 [Elaeis guineensis] |
| Swissprot | tr|O48766|GUN11_ARATH | 0 | Endoglucanase 11 (Precursor) |
| trEMBL | tr|G7K7J2|G7K7J2_MEDTR | 0 | Glycosyl hydrolase family 9 protein {ECO:0000313|EMBL:AES99876.1} |
| TAIR | AT2G32990 | 0 | glycosyl hydrolase 9B8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 603131 | 606673 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015036
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 24 | 489 | 3.20E-141 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.240 |
| SRR5643514 | five period of Gastrodia elata | 0.290 | |
| SRR5643515 | five period of Gastrodia elata | 0.220 | |
| SRR5643524 | five period of Gastrodia elata | 0.100 | |
| SRR5643525 | five period of Gastrodia elata | 5.590 | |
| SRR5643528 | five period of Gastrodia elata | 1.630 | |
| SRR5643658 | five period of Gastrodia elata | 3.440 | |
| SRR5643659 | five period of Gastrodia elata | 0.030 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.040 | |
| SRR5643662 | five period of Gastrodia elata | 0.040 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.42 |
| Juven | Juvenile tuber | 0.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.08 | |
| Mother_Juven | Mother tuber of Juvenile | 0.02 |