Detail information of GWHGAAEX015037/evm.TU.scaffold_64.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15596341|ref|NP_249835.1| | 6.00E-22 | major facilitator superfamily (MFS) transporter [Pseudomonas aeruginosa PAO1] |
| KOG | KOG2533 | 1.00E-173 | Permease of the major facilitator superfamily |
| nr | gi|743805037|ref|XP_010927337.1| | 0 | PREDICTED: putative glycerol-3-phosphate transporter 5 [Elaeis guineensis] |
| Swissprot | tr|Q9SL56|GLPT5_ARATH | 0 | Putative glycerol-3-phosphate transporter 5 |
| trEMBL | tr|F6HCI4|F6HCI4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB49930.1} |
| TAIR | AT2G13100 | 1.00E-173 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 614239 | 624844 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015037
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07690.15 | MFS_1 | 67 | 416 | 5.10E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0005887 | Cellular Component | integral component of plasma membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.270 |
| SRR2545915 | Juvenile tuber | 3.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.990 |
| SRR5643514 | five period of Gastrodia elata | 7.690 | |
| SRR5643515 | five period of Gastrodia elata | 12.950 | |
| SRR5643524 | five period of Gastrodia elata | 8.000 | |
| SRR5643525 | five period of Gastrodia elata | 15.960 | |
| SRR5643528 | five period of Gastrodia elata | 13.970 | |
| SRR5643658 | five period of Gastrodia elata | 12.330 | |
| SRR5643659 | five period of Gastrodia elata | 11.610 | |
| SRR5643660 | five period of Gastrodia elata | 12.240 | |
| SRR5643661 | five period of Gastrodia elata | 11.300 | |
| SRR5643662 | five period of Gastrodia elata | 12.470 | |
| SRR5643663 | five period of Gastrodia elata | 10.750 | |
| SRR5643664 | five period of Gastrodia elata | 13.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.86 |
| Juven | Juvenile tuber | 10.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.58 | |
| Mother_Juven | Mother tuber of Juvenile | 17.51 |