Detail information of GWHGAAEX015041/evm.TU.scaffold_64.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21902.00E-153PolyC-binding proteins alphaCP-1 and related KH domain proteins
nrgi|743867990|ref|XP_010905450.1|0PREDICTED: poly(rC)-binding protein 1-like [Elaeis guineensis]
Swissprottr|P58223|Y4837_ARATH8.00E-25KH domain-containing protein At4g18375
trEMBLtr|M0TDU9|M0TDU9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P01590_001}
TAIRAT3G046102.00E-153RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000067665584675119+
Transcript Sequence

Network for GWHGAAEX015041

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00013.28KH_1491013.00E-13
PF00013.28KH_11412062.20E-14
PF00013.28KH_13193823.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms230.110
SRR2545915Juvenile tuber214.910
SRP108465SRR5643513five period of Gastrodia elata142.290
SRR5643514five period of Gastrodia elata104.930
SRR5643515five period of Gastrodia elata108.990
SRR5643524five period of Gastrodia elata108.700
SRR5643525five period of Gastrodia elata57.570
SRR5643528five period of Gastrodia elata68.570
SRR5643658five period of Gastrodia elata57.980
SRR5643659five period of Gastrodia elata160.350
SRR5643660five period of Gastrodia elata186.060
SRR5643661five period of Gastrodia elata187.690
SRR5643662five period of Gastrodia elata173.180
SRR5643663five period of Gastrodia elata174.530
SRR5643664five period of Gastrodia elata190.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1178.430
SRR6049655Rhizomagastrodiae_C368-T10_good_1164.600
SRR6049656Rhizomagastrodiae_C368-T07_good_1149.570
SRR6049657Rhizomagastrodiae_C368-T07_good_1199.990
SRR6049658Rhizomagastrodiae_C368-T04_good_1185.950
SRR6049659Rhizomagastrodiae_C368-T04_good_1213.250
SRR6049660Rhizomagastrodiae_C368-T01_good_1187.670
SRR6049661Rhizomagastrodiae_C368-T04_good_1179.380
SRR6049662Rhizomagastrodiae_C368-T01_good_1158.530
SRR6049663Rhizomagastrodiae_C368-T01_good_1166.300
SRR6049664Rhizomagastrodiae_C368-T10_good_1165.690
SRR6049665Rhizomagastrodiae_C368-T10_good_1165.690
SRP279888GastroGastrodia elata tuber 188.10
JuvenJuvenile tuber276.84
Mother_GastroMother tuber of Gastrodia elata 108.19
Mother_JuvenMother tuber of Juvenile 206.09