Detail information of GWHGAAEX015049/evm.TU.scaffold_64.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428781089|ref|YP_007172875.1|2.00E-105tryptophan synthase subunit alpha [Dactylococcopsis salina PCC 8305]
KOGKOG41755.00E-154Tryptophan synthase alpha chain
nrgi|743760274|ref|XP_010936073.1|1.21E-156PREDICTED: tryptophan synthase alpha chain-like [Elaeis guineensis]
Swissprottr|O22765|TRPA1_ARATH1.00E-154Tryptophan synthase alpha chain
trEMBLtr|A0A067JC03|A0A067JC03_JATCU4.00E-152Uncharacterized protein {ECO:0000313|EMBL:KDP21376.1}
TAIRAT4G026105.00E-154Aldolase-type TIM barrel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000067950631983633+
Transcript Sequence

Network for GWHGAAEX015049

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00290.19Trp_syntA553051.80E-94
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01695trpA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Pyrimidine metabolismmap00240
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0006568Biological Processtryptophan metabolic process
GO:0004834Molecular Functiontryptophan synthase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.820
SRR2545915Juvenile tuber32.250
SRP108465SRR5643513five period of Gastrodia elata31.890
SRR5643514five period of Gastrodia elata50.590
SRR5643515five period of Gastrodia elata37.940
SRR5643524five period of Gastrodia elata49.770
SRR5643525five period of Gastrodia elata17.880
SRR5643528five period of Gastrodia elata23.000
SRR5643658five period of Gastrodia elata27.480
SRR5643659five period of Gastrodia elata28.450
SRR5643660five period of Gastrodia elata32.400
SRR5643661five period of Gastrodia elata39.650
SRR5643662five period of Gastrodia elata47.870
SRR5643663five period of Gastrodia elata38.750
SRR5643664five period of Gastrodia elata40.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.580
SRR6049655Rhizomagastrodiae_C368-T10_good_123.010
SRR6049656Rhizomagastrodiae_C368-T07_good_141.070
SRR6049657Rhizomagastrodiae_C368-T07_good_131.330
SRR6049658Rhizomagastrodiae_C368-T04_good_127.790
SRR6049659Rhizomagastrodiae_C368-T04_good_121.730
SRR6049660Rhizomagastrodiae_C368-T01_good_131.260
SRR6049661Rhizomagastrodiae_C368-T04_good_132.360
SRR6049662Rhizomagastrodiae_C368-T01_good_164.040
SRR6049663Rhizomagastrodiae_C368-T01_good_145.370
SRR6049664Rhizomagastrodiae_C368-T10_good_141.290
SRR6049665Rhizomagastrodiae_C368-T10_good_141.290
SRP279888GastroGastrodia elata tuber 44.00
JuvenJuvenile tuber19.31
Mother_GastroMother tuber of Gastrodia elata 20.19
Mother_JuvenMother tuber of Juvenile 14.56