Gene detail

Detail information of GWHGAAEX015050/evm.TU.scaffold_64.37

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2033	Low density lipoprotein B-like protein
nr	gi\|672140400\|ref\|XP_008794001.1\|	PREDICTED: conserved oligomeric Golgi complex subunit 1-like [Phoenix dactylifera]
trEMBL	tr\|M0SPT2\|M0SPT2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P17690_001}
TAIR	AT5G16300	Vps51/Vps67 family (components of vesicular transport) protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	985265	1008743	+

Transcript Sequence
>GWHTAAEX015050 GCAACATTTTACTACTACCAATCATTCATTTCTCATTCTAGTAAAACTGAGGGGAGTCATAAAAAAAAAGCACTGCATGTTTTTCGGATCAGGCTTCCGCTCACAATGAAGACGGCCGGCCAGCCGCCGGCAGACTTGACGGCTGCGAATACCCTCGGAAGTCTTCGCGAAGCCGAATCCCTCTTCCGCTCGAAGTCGATTCATGAGATCCGCACTGTTGAAGCCAGCACTCGCCTCGATATCGAGCAGAAGAAGGAAGAACTCCGGCAGCTTGTCGGCAAAAGTTACCGCGATCTAATAGACTCTGCCGATTCAATCATCCAGATGAAATCCTCCTGCGAATCCATCGCCTCAAACCTCTCCCGCATCGACGCCGCTCTTCGCTTGCTCTCCCCCTCGTCCACCGAGTCCCCTCACATTGCTCCCGACCCTGCTCGCCGCGCCAAGATCTACGGCATTGCATGCCGCGTCAAATACCTCGTAGACACCCCTGAGAACATATGGGGATGCCTCGACGAATCCATGCTTCTCGAGGCATCAGGTCGATATCTCCGTGCCAAAGAAGTTCATGGCCTCCTTTCCAAAACTTCCGCCACTCCCGACGTTCTGTCTCGCTTCCCGCTTCTGCAGCACCAGTGGCAGATCGTCGAGAGCTTCAAGGCGCAGATTTCGCAGCGCAGCCGCGATCGGCTCATGGATCGAGGCCTTTCTGTGGCGGCCTACGCCGACGCTCTTGCCGCCGCTGCAACCATCGATGATCTCAACCCTAAGCAGGTTCTTGATGTTTTTCTCGATTCGAGAAGGGCGTGGATCTCGCAGAAACTTGTTGGCACGGCGGCTGCGGATGATGGTCCCGATTCGTCGTTGGCCGTGCTTTGCGATGTTGTGAAAGTGATTAGGGCTAGTCTGGGACAAGTAGGGCAGCTTTTACGTCATGCGTTGAGTGAAATGCCGCTGTTTTACAAATTGGTGCTTGGTTCGCCCCCTGGATCGCAGCTGTTTGGGGGAATCCCAAATCCGGAGGACGAGGTGAAGCTTTGGAAATTGCACAGGGAGAAGCTTGAGTCAGTAATGGTTTTGCTGGAACCCGAATTTATCAGCCAGGCATGTTCTTCGTGGTTGGAGAGTTGCTGCGATGAGATTTTTGCTAAGTCGTTCAGCGGTAAGGGGCTTATTCGTTCTATTTTAAGTGGCGAAGGGCTAGTAGCTGCCGAGAAGATGGTCCGGGAGGCATTGGATGCGAAAGATGGGTTGGAGATCAGCTTGGAGGAGTGGCTCAGGGATGTCTTTGGTTCTGATATCAATTCCCCTTGGAAACAAATATGTGGACTTATTTTGAAAGATGGCAAGGATATCTTGGAGGATAGAATGGAACAAGCATTCTTGCTGAGGATGAAAGAAATTGTTCAATCTGGATTTGAAGACTTGACCAAAGTAGTTAGCATTAAGGGTTCAGTTGAAGCAATTGTAGCAGGTCCTAATGGTGCAAATGATTTCTATGAGTACTTGAAGATATCATCAAAGGGTGGTGGAGTTTGGTTTTCAGAGTTGAGTCAAAAGAGAATGGGACTTGCTTATAATTTAAAACCATCTGCTGATGAAAATGACTTTCGCACTTGTCTCAATGCCTTTTTTGGTCCAGAAGTTTGCCGAATTAGAAATCTGATAGATAACAAATTATGGAGCATTTTAGATGATCTTTTGTGCTTTGTAGAATCACACAATTCTACCTTGAGGTTAAAAGAACTGGCTCCGCATATTCAGGATAAATGTTACAATTCAATGTCAGCCTTTTTGGAGGAGATCCATGGGGAGATGAATGCCCCATCAGTTTCTTTAATTAACAACAGAACAGATAATCAATTTCAACCTTCTCCTGTAATTGTTGAGAGATCACTTTTTCTTGCACGTCTCTTGTATGCGTTACGCAATCATTCAAGTCATATTTCACTCATACTTGGCTCTCCAAGGCAATGGGCTAAGGAAACAATTGTTACTACTTATGCTAGCTTGGCTTCACCTCTATCTAAGCAATACAAAGGAACCCTTAACTCGCCACAACCTTTTAGTCCTAGAAGACCTGCTTATGATATCCTTCCAAGTCCTGGAGGGCAGTCTCTTGAAACCTCTAAAAGGCAAGCTTTCTCTGCAGCTGCTGCATTACTTACAGTTGATAATTGTACAAATCTGAAACATGAAAAGTTGAGCAGAAACCTTCAGAATCTTTGCATTAAAGCCCATAACCTATGGATTAGTTGGGTTTCCAATGAATTGTCTATCATTTTGTCCAAGAATCTAAATCATGATAATGCACTTTCTGTCACAAATCCTTTGCGGGGTTGGGAAGTGACTGTGATCAAGCAAGAGGAACCAGCTGAGGGTCATTTAGAGATGCAAATTGTTCTCCCATCCATGGCTTCACAGTACATTATATCTTTCCTCTTCCAAGCATGCCAAGAAATTCATAAAGCTGGGGGTCATATTCTTAATAAAGTTATTCTGCAAAATTTTGCCTCAGAAATGTTAAAGAAGGTTATTGGAGTTTATGAAAACTTTCTTGCACTAGTGGAGGCTCCTGAATCACGGGTATCTGAAAAAGGTGTTCTGCAAATTTTGTTCGACTTACGATTCTCTGCTGATGTTCTGTCTGGGGGCAATGATACAAACTCTAAGCCTCTTTTATCACTGAACTCAAATCTTATGGAGATTGTTTCAGGGCTTATACATAGGTTCTCCTTAAAATTGGACCCTATTGATTGGGCCACGTATGAACCTTATCTTTGGGAGAATGAAAAGCAGTCATACAAACGATGTTCTGTTCTCTTTGGGTTTTTTATTCAGCTCAATCGTCTCTACATTGATACTGTTCAAAAATTACCAACAAAAACCAATACGGAATCAAATATATTGAGATGTTCTGCTGTCCCAAGATTCAAGTATCTTCCAATCAGCGCCCCTGCATTGTCGTCAAGAGGGTCACATAAATCAGCTGCTCAAATGTCTACGGATGACGCATCTACAAAGACCCCATGGAAGGCATATTCAAATGGGGAACAGTCTCCAAAGCTCGACTTTGACGATTCATCTAGCTTTGGAGCTGCGGCGCCGCTGCTGAAATCCTTTATGACTCAGGTGGGGAGCAAATTTGGGGAGAGCACATCGAAATGGGGAATGATGCTTTCAGACGGGAAGCTGAAGGACAGATCGGCCGCCGCCATGTCGACATTTGGCGACATGCTTCCCGGCCCAGCCGCTGGGCTCCTCTCTTCCCTCACTTCTGGCTCAAGGTTTGATTCTTTATAGACCTGAATTTTTATTGGATATTTTTTATATATACATGCAACAAATATTATATTCAACCTTGAGTCTTTATGTAATAGAGCTGATTTTGTGGCTTTTGTGTAGGTATGTAGCATAAGTTTGTGGTATATATATATTTTAAATGTTCCATTTTATGGTTAGTATATGTAACATTTTAAAACTTTAGTGGATAGGGTGAAAATAATGAAGTTTATGGTCTGTATGTAGAAGTTTCATTTTTTGTTTTATTTATTAAATTATTTTGTTGGCTTTTTTTTTTGTTTTGTATAAAGCTGAGGTAGAGAAATATATATACTTTTTATTTTATTTATCTGGAGATTTTTTTTT

Network for GWHGAAEX015050

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08700.10	Vps51	22	94	1.50E-15

Protein Sequence

>GWHPAAEX015050
MKTAGQPPADLTAANTLGSLREAESLFRSKSIHEIRTVEASTRLDIEQKKEELRQLVGKSYRDLIDSADSIIQMKSSCESIASNLSRIDAALRLLSPSSTESPHIAPDPARRAKIYGIACRVKYLVDTPENIWGCLDESMLLEASGRYLRAKEVHGLLSKTSATPDVLSRFPLLQHQWQIVESFKAQISQRSRDRLMDRGLSVAAYADALAAAATIDDLNPKQVLDVFLDSRRAWISQKLVGTAAADDGPDSSLAVLCDVVKVIRASLGQVGQLLRHALSEMPLFYKLVLGSPPGSQLFGGIPNPEDEVKLWKLHREKLESVMVLLEPEFISQACSSWLESCCDEIFAKSFSGKGLIRSILSGEGLVAAEKMVREALDAKDGLEISLEEWLRDVFGSDINSPWKQICGLILKDGKDILEDRMEQAFLLRMKEIVQSGFEDLTKVVSIKGSVEAIVAGPNGANDFYEYLKISSKGGGVWFSELSQKRMGLAYNLKPSADENDFRTCLNAFFGPEVCRIRNLIDNKLWSILDDLLCFVESHNSTLRLKELAPHIQDKCYNSMSAFLEEIHGEMNAPSVSLINNRTDNQFQPSPVIVERSLFLARLLYALRNHSSHISLILGSPRQWAKETIVTTYASLASPLSKQYKGTLNSPQPFSPRRPAYDILPSPGGQSLETSKRQAFSAAAALLTVDNCTNLKHEKLSRNLQNLCIKAHNLWISWVSNELSIILSKNLNHDNALSVTNPLRGWEVTVIKQEEPAEGHLEMQIVLPSMASQYIISFLFQACQEIHKAGGHILNKVILQNFASEMLKKVIGVYENFLALVEAPESRVSEKGVLQILFDLRFSADVLSGGNDTNSKPLLSLNSNLMEIVSGLIHRFSLKLDPIDWATYEPYLWENEKQSYKRCSVLFGFFIQLNRLYIDTVQKLPTKTNTESNILRCSAVPRFKYLPISAPALSSRGSHKSAAQMSTDDASTKTPWKAYSNGEQSPKLDFDDSSSFGAAAPLLKSFMTQVGSKFGESTSKWGMMLSDGKLKDRSAAAMSTFGDMLPGPAAGLLSSLTSGSRFDSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.870
SRP064423	SRR2545915	Juvenile tuber	33.860
SRP108465	SRR5643513	five period of Gastrodia elata	31.970
	SRR5643514	five period of Gastrodia elata	31.450
	SRR5643515	five period of Gastrodia elata	30.810
	SRR5643524	five period of Gastrodia elata	33.740
	SRR5643525	five period of Gastrodia elata	26.810
	SRR5643528	five period of Gastrodia elata	32.530
	SRR5643658	five period of Gastrodia elata	30.110
	SRR5643659	five period of Gastrodia elata	34.600
	SRR5643660	five period of Gastrodia elata	33.820
	SRR5643661	five period of Gastrodia elata	32.550
	SRR5643662	five period of Gastrodia elata	30.410
	SRR5643663	five period of Gastrodia elata	28.610
	SRR5643664	five period of Gastrodia elata	30.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.290
SRP279888	Gastro	Gastrodia elata tuber	29.16
	Juven	Juvenile tuber	41.12
	Mother_Gastro	Mother tuber of Gastrodia elata	48.15
	Mother_Juven	Mother tuber of Juvenile	59.55