Detail information of GWHGAAEX015060/evm.TU.scaffold_64.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG07953.00E-12Chorismate mutase
nrgi|727465527|ref|XP_010514637.1|3.98E-11PREDICTED: chorismate mutase 1, chloroplastic-like [Camelina sativa]
Swissprottr|P42738|CM1_ARATH8.00E-13Chorismate mutase 1, chloroplastic (Precursor)
trEMBLtr|D7LNU9|D7LNU9_ARALL2.00E-11Putative uncharacterized protein {ECO:0000313|EMBL:EFH53422.1}
TAIRAT3G292003.00E-12chorismate mutase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006711610251163177+
Transcript Sequence

Network for GWHGAAEX015060

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01850E5.4.99.5 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0009073Biological Processaromatic amino acid family biosynthetic process
GO:0046417Biological Processchorismate metabolic process
GO:0004106Molecular Functionchorismate mutase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.110
SRR2545915Juvenile tuber17.920
SRP108465SRR5643513five period of Gastrodia elata69.200
SRR5643514five period of Gastrodia elata56.670
SRR5643515five period of Gastrodia elata75.360
SRR5643524five period of Gastrodia elata73.270
SRR5643525five period of Gastrodia elata68.380
SRR5643528five period of Gastrodia elata74.450
SRR5643658five period of Gastrodia elata92.470
SRR5643659five period of Gastrodia elata105.720
SRR5643660five period of Gastrodia elata113.200
SRR5643661five period of Gastrodia elata88.860
SRR5643662five period of Gastrodia elata107.260
SRR5643663five period of Gastrodia elata100.380
SRR5643664five period of Gastrodia elata105.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.010
SRR6049655Rhizomagastrodiae_C368-T10_good_180.230
SRR6049656Rhizomagastrodiae_C368-T07_good_153.000
SRR6049657Rhizomagastrodiae_C368-T07_good_176.270
SRR6049658Rhizomagastrodiae_C368-T04_good_166.370
SRR6049659Rhizomagastrodiae_C368-T04_good_187.240
SRR6049660Rhizomagastrodiae_C368-T01_good_165.310
SRR6049661Rhizomagastrodiae_C368-T04_good_172.190
SRR6049662Rhizomagastrodiae_C368-T01_good_156.820
SRR6049663Rhizomagastrodiae_C368-T01_good_146.260
SRR6049664Rhizomagastrodiae_C368-T10_good_157.620
SRR6049665Rhizomagastrodiae_C368-T10_good_157.620
SRP279888GastroGastrodia elata tuber 76.60
JuvenJuvenile tuber76.26
Mother_GastroMother tuber of Gastrodia elata 37.20
Mother_JuvenMother tuber of Juvenile 75.50