Detail information of GWHGAAEX015061/evm.TU.scaffold_64.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG07951.00E-134Chorismate mutase
nrgi|743760799|ref|XP_010938904.1|2.47E-145PREDICTED: chorismate mutase 3, chloroplastic [Elaeis guineensis]
Swissprottr|P42738|CM1_ARATH3.00E-135Chorismate mutase 1, chloroplastic (Precursor)
trEMBLtr|R0FPA4|R0FPA4_9BRAS8.00E-137Uncharacterized protein {ECO:0000313|EMBL:EOA24347.1}
TAIRAT3G292001.00E-134chorismate mutase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006711632001181077+
Transcript Sequence

Network for GWHGAAEX015061

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01850E5.4.99.5 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0009073Biological Processaromatic amino acid family biosynthetic process
GO:0046417Biological Processchorismate metabolic process
GO:0004106Molecular Functionchorismate mutase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms104.590
SRR2545915Juvenile tuber132.150
SRP108465SRR5643513five period of Gastrodia elata123.840
SRR5643514five period of Gastrodia elata103.350
SRR5643515five period of Gastrodia elata133.590
SRR5643524five period of Gastrodia elata126.410
SRR5643525five period of Gastrodia elata167.590
SRR5643528five period of Gastrodia elata168.790
SRR5643658five period of Gastrodia elata180.680
SRR5643659five period of Gastrodia elata164.830
SRR5643660five period of Gastrodia elata154.600
SRR5643661five period of Gastrodia elata151.300
SRR5643662five period of Gastrodia elata171.160
SRR5643663five period of Gastrodia elata174.590
SRR5643664five period of Gastrodia elata157.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_189.570
SRR6049655Rhizomagastrodiae_C368-T10_good_179.700
SRR6049656Rhizomagastrodiae_C368-T07_good_194.150
SRR6049657Rhizomagastrodiae_C368-T07_good_1110.820
SRR6049658Rhizomagastrodiae_C368-T04_good_187.450
SRR6049659Rhizomagastrodiae_C368-T04_good_1103.890
SRR6049660Rhizomagastrodiae_C368-T01_good_193.550
SRR6049661Rhizomagastrodiae_C368-T04_good_191.240
SRR6049662Rhizomagastrodiae_C368-T01_good_175.410
SRR6049663Rhizomagastrodiae_C368-T01_good_171.610
SRR6049664Rhizomagastrodiae_C368-T10_good_184.210
SRR6049665Rhizomagastrodiae_C368-T10_good_184.210
SRP279888GastroGastrodia elata tuber 162.71
JuvenJuvenile tuber162.42
Mother_GastroMother tuber of Gastrodia elata 104.58
Mother_JuvenMother tuber of Juvenile 154.32