Gene detail

Detail information of GWHGAAEX015066/evm.TU.scaffold_64.56

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743760770\|ref\|XP_010938775.1\|	4.38E-171	PREDICTED: uncharacterized protein LOC105057775 [Elaeis guineensis]
trEMBL	tr\|M0TCS5\|M0TCS5_MUSAM	2.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P34820_001}
TAIR	AT3G29180	2.00E-115	Protein of unknown function (DUF1336)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	1317032	1322031	+

Transcript Sequence
>GWHTAAEX015066 GAAGAGCCGTTGAGCGTATGCCTCTGCAGAAATGCAGTATCTTCTCTTCCAAGTTTTTTTCTCTGTTTTGAGCGCTGAAATTTGGCTCGTTTAATTCTATTTTTCCAAGTTTGATAGGTAAAGCTGTATAGAGTTTTTGAGAAGCATTCTGGCTTCAAACGGGCAATTGCGTATTACAGTTAAATCAGGTTAATCTACCAGGATTTGCATTTGTTTGCTGTTATGGGTGGCTGTGTTTCAACTCATAAAATGGGCAAATTCAGACAGTATTCTCTCAAATCCAGAAAACGGCGAAGAAAGGTTTCCGCCACATTGATTGATGCACTAAAAACCCGGTTTAATTATGATTATAGAAACCAATTTGCTCATGTAGAAAGCTCTGCATTGGCTCGTCGAGGGTCAGAACTTTCCAACTTAACTGTTCATCTCTCGCAATTGCAATGGCATCTTAACGATGCAGATGCGGACGTGATGTGCCAAGATGAAGTGTGGTTTGATTCTGTCAGCATCCTTGAATCCGAATCAGACGATGATTTCAGCAGCATCCCTGGAGACAGCTTATCTCCTGCAAGCAACAGATTTACAAGCCAGATAATTCAGTACGAAAATGCGGCATACTGTGTAAATGCTGTATGCAAATTTGAGGACAGGGATTGTTGTCCAGTGGCTTTGGCAGTTGAGCATTTCATTAAAGGAAATGGTGGTAAAACTGAAGAGCTTTCTGAATGTCGAGATGATAGAAGCAATGCTGCTAGTCAGCAAGGAAATGAGATTTCTAATAGGGATATTAATGAGCACAAGTCTGAAACACAGATAAAGGAAATTCATCCCAGATCTCGAATGGTTCCTTTGATCAACTTTAATGAAAATTACCAACAGATTGCAAACGTAAACTCGCCAGCTGCAAAGAGAAAATCGGCTGTTATAAGGTTTTCAATCATGCGAAAATCTTTCGAAGGAGATGAAGCCACCATGTTATGTGCTTCAAAAAAGTTTTTGTATCATCCTATTGCGGGTCTTTTGGTTCCATGCTCATCAGGGCCGAAGTTAGCACCTGGATGTTGGTCTATACTTGAACCATCAATCTTTAAGCTCCGTAGTGAGAGCTATTTCAGAGATAAGAAGAAGTGCGCCGCACCGTTACATGCGCCTTACACTCCATTTGGTGTGGATTTGTTCATGTGCCCATGTAAAATCAATCACATTGCTCAGCATGTTAAACTTCCACCTCTCAAATCGCATGGCAATATTCCACCTCTTCTTATTGTAAACATTCAGCTGCCTACTTATCCTGCTGCCATGTTTCTTGGTGATAGTGATGGAGAAGGGATGAGCTTAGTAGTGTATTTCAGAATATCTGAGAATTTTGACAAAGAGATCAGTCCTACTTTTCAAGATATGATTAACAGACTTATGGATGATGAGGTAGAAAAGGCCAAGGGATTTCCCAGAGATTCTACTATTTCTTTTAGGGAAAGATTAAAAATACTAACCGGGGTTGTCAATCCTGAGGATCTCTATTTGAGTGCAGCAGAAAAGAAGCTTGTGCATGCTTATAATGAAAAGCCGGTGCTCTCGCGACCTCAGCACAACTTTTTTAGAGTAAGAGATGCCTCATTCTTCCTCTCAATTGCAAATAATCTTTAACTATCATGTGATGTTGCAAGTAAGGCTCATTTATTGCTTTGAGTGTTAGGAAATCAAGTGTGTGCATCATGTTGAATTATTTTAATCATCTCTTAATTGGCATTCGTTATTGTTCCTTGAAGAAATTTGTTTATAAACT

Network for GWHGAAEX015066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07059.11	DUF1336	281	459	4.80E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.000
SRP064423	SRR2545915	Juvenile tuber	0.730
SRP108465	SRR5643513	five period of Gastrodia elata	3.630
	SRR5643514	five period of Gastrodia elata	7.960
	SRR5643515	five period of Gastrodia elata	5.050
	SRR5643524	five period of Gastrodia elata	6.360
	SRR5643525	five period of Gastrodia elata	0.560
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.680
	SRR5643659	five period of Gastrodia elata	0.260
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.610
	SRR5643662	five period of Gastrodia elata	0.840
	SRR5643663	five period of Gastrodia elata	0.120
	SRR5643664	five period of Gastrodia elata	0.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.930
SRP279888	Gastro	Gastrodia elata tuber	1.30
	Juven	Juvenile tuber	1.08
	Mother_Gastro	Mother tuber of Gastrodia elata	1.90
	Mother_Juven	Mother tuber of Juvenile	1.45