Detail information of GWHGAAEX015079/evm.TU.scaffold_64.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2228 | 4.00E-34 | Origin recognition complex, subunit 4 |
| nr | gi|672128347|ref|XP_008787657.1| | 3.12E-177 | PREDICTED: origin recognition complex subunit 4 [Phoenix dactylifera] |
| Swissprot | tr|Q5N8Q4|ORC4_ORYSJ | 1.00E-151 | Origin of replication complex subunit 4 {ECO:0000303|PubMed:15939553} |
| trEMBL | tr|M0U2D2|M0U2D2_MUSAM | 3.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21730_001} |
| TAIR | 7291857 | 4.00E-34 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 1585955 | 1595217 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015079
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00004.28 | AAA | 54 | 200 | 2.60E-05 |
| PF14629.5 | ORC4_C | 273 | 437 | 5.00E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02606 | ORC4 | Cell cycle | map04110 |
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000808 | Cellular Component | origin recognition complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.480 |
| SRR2545915 | Juvenile tuber | 12.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.400 |
| SRR5643514 | five period of Gastrodia elata | 14.150 | |
| SRR5643515 | five period of Gastrodia elata | 12.100 | |
| SRR5643524 | five period of Gastrodia elata | 14.500 | |
| SRR5643525 | five period of Gastrodia elata | 13.310 | |
| SRR5643528 | five period of Gastrodia elata | 11.880 | |
| SRR5643658 | five period of Gastrodia elata | 14.570 | |
| SRR5643659 | five period of Gastrodia elata | 10.720 | |
| SRR5643660 | five period of Gastrodia elata | 9.910 | |
| SRR5643661 | five period of Gastrodia elata | 11.570 | |
| SRR5643662 | five period of Gastrodia elata | 9.470 | |
| SRR5643663 | five period of Gastrodia elata | 9.890 | |
| SRR5643664 | five period of Gastrodia elata | 8.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.12 |
| Juven | Juvenile tuber | 12.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.92 | |
| Mother_Juven | Mother tuber of Juvenile | 10.07 |