Gene detail

Detail information of GWHGAAEX015082/evm.TU.scaffold_64.76

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1765	4.00E-122	Regulator of ribosome synthesis
nr	gi\|695042612\|ref\|XP_009408968.1\|	1.78E-172	PREDICTED: ribosome biogenesis regulatory protein homolog [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SH88\|RRS1_ARATH	3.00E-130	Ribosome biogenesis regulatory protein homolog
trEMBL	tr\|M0TG89\|M0TG89_MUSAM	2.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P10010_001}
TAIR	AT2G37990	4.00E-122	ribosome biogenesis regulatory protein (RRS1) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	1665653	1674560	-

Transcript Sequence
>GWHTAAEX015082 AAAACCCTAAATCCTCTCCTCTGCGAATCCTAGGATTCTCTTCCTCCTTCCAGTCGCCCTTCTCTTCTCCACGCTTGCGCCGGAAGTTCAACTTTACGAAGACGGCGGCAGTTGGCGCCTTTCTCTTCTCCACGTCCAGTCGGTTGGAGCTTGCTGGCAACTACCTGAAGCTCGGTAACCTTGAATTTTAAATTAGGTACACCAATATACGTCCTTGAGCTCTTTGAAGAGGGAAGTGCCGTAGATCTCTAAGCTTTTAAAAGGATGCTTTTTTTGGCATAGAAGCAATATTGCATTTAAGTATTATTGGGAAAAACTTTTGGATTGTTTCATTTTTTGAGAAAAGCAAAGTTATAGCGTTCAGTCACAATGGAAGCGCAGAAGTACCAAATTGATTTGGGAAATCTCATGGCCTACGATCCAAGCCAGCACTTCCAGCCCCTCGCATTGTCCAGGGAAGAATTGTCGAGTCAGTGTTTAGAAAAGGGAGCAGAGCTCATTCAAGAGGTTGTCAATGCTCTGTTCAGTTTACCATCGACTGAAGACCTAGATGGGCCTATTGTTATATTGCCAGAACCTTCTATGAAACTTCCCAGGGAGAAACATTTGCCTAAGCCTAAACCTCCTACAAAATGGGAGTTGTTTGCCAAGATGAAAGGAATAAAGAAGCATAAAAAGGACAAGCGTGTTTTTGATGAACAAACGAATACATGGAAGAGACGGTATGGCTATGATCGAGTGAATGATGATAGAGATGTACCTATTATCGAGGCTAAAATGACTGATGAGCCTGGTGAGGATCCTTTCAACAAAAGGAAAGAAGCAAAGAAGAAACGGGTCGAAAAGCAAGAAAAAAACCAGCTGCAGAATCTTAAACAAGCTGTTAAAGCTGGTGCTTTGCCAAGTCATGTCCAGCTCGCTGCAACAGCGTTACCTATCACTGGAACTCATAGAGTAACACCTAAGAAAGCTAGTAAAGAAGAGCTTCAGAATGTTGCAGGGATGGCAGCAACAGCAACTGCAAGTGGCGGAAAATTTGATAAGAAACTTCCTGGGGAGAAACCTGCAAAACATGCCGGAAAGCATCGAAAGTTTCTACCTGTTGTGGAAGGAAAGGGAATGGGGGCTCAAGAGAAAGAACAAACAGAGAAAATACTTAACAAATTGATGGCTAAAAGCTCTAATGATATACTTGATGTTGAGAAGGCTGTTACAATGTTCAATGTGAAGAAAGAGAAACAAAGGAATAGAACAAAGAAAGATGCTGTTTCTTCTTCTGCATCAAATAAGCTGAAGCACACAATGAAACCTTTTAAAAAGTATTCCAAGAAGAAGCAATAATTTTGTGGTAGTTGTTATTCCCTAACGCAATAATTAAGAATGTTTTTGCAAGCACTTGCATTATAGTTGAAATCTTATTTTTTATGCGCTTATAGAAAGAATTGCAATGTGTATTATTAGCGTTAAAAAATATTATGAGGAACATCTACTCAGTTTAGTTTTAATGAGGGCTTTATATGCCTCTCTTTTTATTTTGTCCTCTTCATTATTTTATGTATAATCAGGTATCATTTTCCTTGTTTATTAACTGAACAGCCGAATAACGATTTATGAAAATTGAAACAGTGTTTCAGGGGACCTTAAG

Network for GWHGAAEX015082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04939.11	RRS1	6	168	6.50E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042254	Biological Process	ribosome biogenesis
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.330
SRP064423	SRR2545915	Juvenile tuber	55.700
SRP108465	SRR5643513	five period of Gastrodia elata	41.490
	SRR5643514	five period of Gastrodia elata	45.390
	SRR5643515	five period of Gastrodia elata	41.250
	SRR5643524	five period of Gastrodia elata	45.570
	SRR5643525	five period of Gastrodia elata	28.860
	SRR5643528	five period of Gastrodia elata	26.870
	SRR5643658	five period of Gastrodia elata	24.750
	SRR5643659	five period of Gastrodia elata	51.300
	SRR5643660	five period of Gastrodia elata	50.050
	SRR5643661	five period of Gastrodia elata	48.750
	SRR5643662	five period of Gastrodia elata	41.770
	SRR5643663	five period of Gastrodia elata	41.740
	SRR5643664	five period of Gastrodia elata	40.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.690
SRP279888	Gastro	Gastrodia elata tuber	46.08
	Juven	Juvenile tuber	35.43
	Mother_Gastro	Mother tuber of Gastrodia elata	28.08
	Mother_Juven	Mother tuber of Juvenile	24.16