Gene detail

Detail information of GWHGAAEX015085/evm.TU.scaffold_64.79

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0802	E3 ubiquitin ligase
nr	gi\|695077753\|ref\|XP_009386234.1\|	PREDICTED: E3 ubiquitin-protein ligase synoviolin-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5Z880\|HRD1_ORYSJ	ERAD-associated E3 ubiquitin-protein ligase HRD1 {ECO:0000305}
trEMBL	tr\|M0U792\|M0U792_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP07810_001}
TAIR	AT3G16090	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	1718199	1746172	+

Transcript Sequence
>GWHTAAEX015085 AACGAAAATGCCACTCTAGCTTTGCATTTCTCATCAAATAACGCCCCCGGCAAAAACACGCATCTTATCGTCGACGGCAAAGCTCGAGTACTTCGTTGCCTGCAACGCACGGGAGAGGAGCAGGAGATCAGCAGGAAATCGCAGATTTTTTGGAAATGATGAAGCTCCAAACGTATGCGGCATTTAGCTTCTTGGCAACACTGGCTGCAGTTTACCACGCTTTCAGCAGCAGAGGACAGTTTTACCCTGCTATGGTTTACTTATCTACATCCAAAATATGTTTCGTTCTTCTATTAAACATGGGTTTTGTTATGATGTGCATTACGTGGCAGCTGGTCAAGCGTTTATTTCTTGGTTCTCTTAGAGAGGCAGAAGTTGAAAGATTGAATGAGCAGTCTTGGAGGGAGGTTATGGAAATTCTTTTTGCTATCACAATATTCCGACAAGATTTTTCAGTTATGTTTCTTGCTATGGTTACTGCTCTTCTATTAATCAAAGCGTTGCATTGGTTGGTTCAGAAGAGGGTGGAGTACATTGAGACAACTCTCAATCCAGCCTTACCTAAATTGTCTCACATTCGGATTGTTTCTTTCATGGGATTTCTTTTTTTTGTTGATTGTCTCTTCTTGTATAGTTCTATAAAGCCATTGATGCAGACCTGGGAGGCATCTGTTTTTCTTTTTTTTGCCTTCGAATACACTATACTAGCTACAACAACGGTATCAACTTTTGTAAAGTATATTTTCTATGTTAGCGACATGCTTATGGAAGGACAGTGGGAAAGGAAGGCAATCTATACATTTTACCTGGAGCTTATTCGTGACCTTCTTCACCTATCGATCTATATTTTATTTTTTCTTGTGATCTTCGCGAGCTATGGTGTGCCTTTGCACTTGATCCGTGAGCTTTATGAGACATTCCGTAGCTTCAGAATGCGTGTTTCAGATTATATCCGCTATCGCAAATTTACTTCAAATATGAATGAACGATTCCCTGATGCAACGCCCGAGGAACTTAATGCAGGTGATGCAACCTGTATCATATGCCGTGAAGAGATGGTTACAGCAAAAAAGTTGCGATGTGGGCATTTTTTTCATGTGCATTGTTTTAGATCTTGGTTACAGAGGCAACATACTTGCCCCACATGTAGAGCTTTGGTTGCTCCTCCTGAAAATGGTTCAACCGCTGTTGGGCACCAACAAGCTGCGTCTTCTGATCATCAGCCTGGATCAGTAGGGGCAAGGACAACACCGGCTTCTGATGCTATTGAAGTAAACCAAAATCAGTCTTTACTTCAAGCTGCAGCCGTGGCTGCTAAAGTATATGAGAAGTCCTTTGTCTATCTTCCAAAAAACTTTTTCTTCTGCCCTCCAGGTTCGTCTGCACCTCCACTCACTCTCAAAACTGAGGCCCCAAGCGAAGGAATAAAGGATCCAAATGAAGCAGCAGATATTATTTCTCAGCTGCAGAAGTATCAGCCTTTTCCTCCTCACCAAAACCTTGCACCCAGCATTAGCTTGCAGCAGGGTTCTTCTTCGCCTCGTAAAGTTGAGATTCAGAGCCAAATGGAGTTTCCTCAAGCTCAACTGCAAGCCCTGGAACAGCAGATGGCCGAGCAGTCGGAAGATAAGAGTGCCGCCTCATCAAGCAGCAGTGTCACTTATTCAGCCTAATGGATGATCAATCAAATCATATATTCAAAACTATATATATATTTCTTTATTTTAATAATATATACAGATAGTAGAGGTGGTCATAATATGAATGTTTGCCTGCCTCTCTGAAGGTTTTTTTATCTTGTGCAGAAACTAGTGAAGTTTTCTTGCTCCAGCTGATTATTTAGTAATTTAGATCGGTTGTGCTGAAGACCGGGGGAGGGGGGAACGAGTTGGAATGTAGATATTATATGAGAATTCCTGATTTTTTCCTTGTTTTGTTTTATTTAAAGGAAAATCAATTAGTTGCAATTCTTATATTTCACAAAACTGTATGAGAAGGTTTCTTGCAATGAACAAGCAGATCAGATTGCATACTTAAACTAAAGCAGTACTTCACAGGCCCGCTGAGGTGTAGCCCTATAGGCCTGTTTTCCACTGGTCTTTAAAAATATTAATTTATTTAGAAATGTGATTGTAAGGTTTTGTAGACTTAGATGTTATATTATATAATATAACATCAGGCATTTCCAGTTCTTGCTTACTGTCTCCGGCTTCGATATGTTCGATGTTTTTTCTCTTATTTTGGATTCGTGTGGTGTCTAATTGTATGGATTTAGTTCTTGCTGATATCGCTTCTAAGTTAGTTATTGTTGCTATGTATGTGCTACGATGAATCTTGTCGTTTATAAGATAAATCAATTTATTTTCCTTATTTTATCTGATCTCCGAAGAGACGAGCTGTGCCCAAGAAATCATATTATAAATTTCTAGATGCTCCTACTGTTCATTCCAAGGAATGTTCTTTGGCATTCAACTTTTTTTACTAAGTGGTTATTTGAC

Network for GWHGAAEX015085

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	293	332	1.20E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10601	SYVN1, HRD1	Protein processing in endoplasmic reticulum	map04141
K10601	SYVN1, HRD1	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.500
SRP064423	SRR2545915	Juvenile tuber	43.030
SRP108465	SRR5643513	five period of Gastrodia elata	36.030
	SRR5643514	five period of Gastrodia elata	41.360
	SRR5643515	five period of Gastrodia elata	41.780
	SRR5643524	five period of Gastrodia elata	44.950
	SRR5643525	five period of Gastrodia elata	47.220
	SRR5643528	five period of Gastrodia elata	51.330
	SRR5643658	five period of Gastrodia elata	53.740
	SRR5643659	five period of Gastrodia elata	36.610
	SRR5643660	five period of Gastrodia elata	34.660
	SRR5643661	five period of Gastrodia elata	34.590
	SRR5643662	five period of Gastrodia elata	33.690
	SRR5643663	five period of Gastrodia elata	36.570
	SRR5643664	five period of Gastrodia elata	31.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.410
SRP279888	Gastro	Gastrodia elata tuber	37.71
	Juven	Juvenile tuber	38.82
	Mother_Gastro	Mother tuber of Gastrodia elata	57.90
	Mother_Juven	Mother tuber of Juvenile	56.32