Detail information of GWHGAAEX015088/evm.TU.scaffold_64.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681873|ref|YP_001865069.1| | 6.00E-62 | hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102] |
| KOG | KOG0266 | 1.00E-169 | WD40 repeat-containing protein |
| nr | gi|743791303|ref|XP_010923395.1| | 6.51E-179 | PREDICTED: WD repeat-containing protein 5 [Elaeis guineensis] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 2.00E-74 | Protein Mut11 |
| trEMBL | tr|A0A0A0K8V6|A0A0A0K8V6_CUCSA | 7.00E-178 | Uncharacterized protein {ECO:0000313|EMBL:KGN44807.1} |
| TAIR | AT4G02730 | 1.00E-169 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 1786177 | 1798572 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015088
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 21 | 55 | 1.10E-07 |
| PF00400.31 | WD40 | 61 | 97 | 1.50E-09 |
| PF00400.31 | WD40 | 104 | 141 | 1.80E-10 |
| PF00400.31 | WD40 | 145 | 183 | 2.00E-10 |
| PF00400.31 | WD40 | 231 | 272 | 4.00E-06 |
| PF00400.31 | WD40 | 279 | 315 | 0.00071 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.710 |
| SRR2545915 | Juvenile tuber | 35.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 52.450 |
| SRR5643514 | five period of Gastrodia elata | 37.410 | |
| SRR5643515 | five period of Gastrodia elata | 44.390 | |
| SRR5643524 | five period of Gastrodia elata | 40.190 | |
| SRR5643525 | five period of Gastrodia elata | 99.610 | |
| SRR5643528 | five period of Gastrodia elata | 75.340 | |
| SRR5643658 | five period of Gastrodia elata | 150.040 | |
| SRR5643659 | five period of Gastrodia elata | 52.610 | |
| SRR5643660 | five period of Gastrodia elata | 45.490 | |
| SRR5643661 | five period of Gastrodia elata | 54.380 | |
| SRR5643662 | five period of Gastrodia elata | 61.900 | |
| SRR5643663 | five period of Gastrodia elata | 67.470 | |
| SRR5643664 | five period of Gastrodia elata | 44.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.80 |
| Juven | Juvenile tuber | 49.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 113.10 | |
| Mother_Juven | Mother tuber of Juvenile | 42.75 |