Detail information of GWHGAAEX015093/evm.TU.scaffold_64.86


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|288931523|ref|YP_003435583.1|1.00E-5150S ribosomal protein L5 [Ferroglobus placidus DSM 10642]
KOGKOG03972.00E-12860S ribosomal protein L11
nrgi|674906657|emb|CDY26360.1|2.54E-127BnaA02g24100D [Brassica napus]
Swissprottr|P46287|RL11_MEDSA5.00E-12960S ribosomal protein L11
trEMBLtr|A0A078GIP4|A0A078GIP4_BRANA9.00E-128BnaA02g24100D protein {ECO:0000313|EMBL:CDY26360.1}
TAIRAT3G587002.00E-128Ribosomal L5P family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006719363691941842-
Transcript Sequence

Network for GWHGAAEX015093

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00281.18Ribosomal_L512659.30E-20
PF00673.20Ribosomal_L5_C691671.10E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02868RP-L11e, RPL11 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms133.690
SRR2545915Juvenile tuber174.750
SRP108465SRR5643513five period of Gastrodia elata187.590
SRR5643514five period of Gastrodia elata203.970
SRR5643515five period of Gastrodia elata180.920
SRR5643524five period of Gastrodia elata207.220
SRR5643525five period of Gastrodia elata83.030
SRR5643528five period of Gastrodia elata116.660
SRR5643658five period of Gastrodia elata75.170
SRR5643659five period of Gastrodia elata190.760
SRR5643660five period of Gastrodia elata196.280
SRR5643661five period of Gastrodia elata195.630
SRR5643662five period of Gastrodia elata156.520
SRR5643663five period of Gastrodia elata162.340
SRR5643664five period of Gastrodia elata143.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1149.080
SRR6049655Rhizomagastrodiae_C368-T10_good_1211.560
SRR6049656Rhizomagastrodiae_C368-T07_good_1184.030
SRR6049657Rhizomagastrodiae_C368-T07_good_1138.700
SRR6049658Rhizomagastrodiae_C368-T04_good_1144.750
SRR6049659Rhizomagastrodiae_C368-T04_good_1125.030
SRR6049660Rhizomagastrodiae_C368-T01_good_1159.870
SRR6049661Rhizomagastrodiae_C368-T04_good_1158.580
SRR6049662Rhizomagastrodiae_C368-T01_good_1242.070
SRR6049663Rhizomagastrodiae_C368-T01_good_1207.230
SRR6049664Rhizomagastrodiae_C368-T10_good_1241.010
SRR6049665Rhizomagastrodiae_C368-T10_good_1241.010
SRP279888GastroGastrodia elata tuber 192.40
JuvenJuvenile tuber152.81
Mother_GastroMother tuber of Gastrodia elata 78.38
Mother_JuvenMother tuber of Juvenile 79.86