Detail information of GWHGAAEX015100/evm.TU.scaffold_64.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20090152|ref|NP_616227.1| | 4.00E-37 | 23S RNA methyltransferase J [Methanosarcina acetivorans C2A] |
| KOG | KOG1098 | 0 | Putative SAM-dependent rRNA methyltransferase SPB1 |
| nr | gi|743758297|ref|XP_010926065.1| | 0 | PREDICTED: putative rRNA methyltransferase [Elaeis guineensis] |
| trEMBL | tr|M0TY55|M0TY55_MUSAM | 0 | Putative rRNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_03163} |
| TAIR | AT4G25730 | 0 | FtsJ-like methyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 1962483 | 1976715 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015100
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01728.18 | FtsJ | 23 | 201 | 8.30E-48 |
| PF11861.7 | DUF3381 | 235 | 382 | 5.00E-40 |
| PF07780.11 | Spb1_C | 597 | 786 | 5.20E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0031167 | Biological Process | rRNA methylation |
| GO:0001510 | Biological Process | RNA methylation |
| GO:0032259 | Biological Process | methylation |
| GO:0008649 | Molecular Function | rRNA methyltransferase activity |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.510 |
| SRR2545915 | Juvenile tuber | 9.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.670 |
| SRR5643514 | five period of Gastrodia elata | 16.680 | |
| SRR5643515 | five period of Gastrodia elata | 16.940 | |
| SRR5643524 | five period of Gastrodia elata | 16.400 | |
| SRR5643525 | five period of Gastrodia elata | 10.940 | |
| SRR5643528 | five period of Gastrodia elata | 21.040 | |
| SRR5643658 | five period of Gastrodia elata | 11.590 | |
| SRR5643659 | five period of Gastrodia elata | 21.770 | |
| SRR5643660 | five period of Gastrodia elata | 19.960 | |
| SRR5643661 | five period of Gastrodia elata | 18.380 | |
| SRR5643662 | five period of Gastrodia elata | 17.450 | |
| SRR5643663 | five period of Gastrodia elata | 13.230 | |
| SRR5643664 | five period of Gastrodia elata | 11.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.98 |
| Juven | Juvenile tuber | 14.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.75 | |
| Mother_Juven | Mother tuber of Juvenile | 20.91 |