Detail information of GWHGAAEX015102/evm.TU.scaffold_64.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427715931|ref|YP_007063925.1| | 1.00E-57 | homogentisate phytyltransferase [Calothrix sp. PCC 7507] |
| nr | gi|695022564|ref|XP_009398415.1| | 2.19E-177 | PREDICTED: probable homogentisate phytyltransferase 2, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q1ACB3|HSTC_ARATH | 7.00E-172 | Homogentisate solanesyltransferase, chloroplastic (Precursor) |
| trEMBL | tr|M0SR30|M0SR30_MUSAM | 3.00E-177 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P22170_001} |
| TAIR | AT3G11950 | 9.00E-160 | TRAF-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 1987268 | 2033653 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015102
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01040.17 | UbiA | 106 | 369 | 1.10E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12501 | HST | Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.970 |
| SRR2545915 | Juvenile tuber | 19.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.930 |
| SRR5643514 | five period of Gastrodia elata | 9.670 | |
| SRR5643515 | five period of Gastrodia elata | 10.770 | |
| SRR5643524 | five period of Gastrodia elata | 10.690 | |
| SRR5643525 | five period of Gastrodia elata | 18.760 | |
| SRR5643528 | five period of Gastrodia elata | 25.070 | |
| SRR5643658 | five period of Gastrodia elata | 19.470 | |
| SRR5643659 | five period of Gastrodia elata | 7.760 | |
| SRR5643660 | five period of Gastrodia elata | 9.290 | |
| SRR5643661 | five period of Gastrodia elata | 8.450 | |
| SRR5643662 | five period of Gastrodia elata | 9.340 | |
| SRR5643663 | five period of Gastrodia elata | 11.110 | |
| SRR5643664 | five period of Gastrodia elata | 9.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.67 |
| Juven | Juvenile tuber | 6.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.70 | |
| Mother_Juven | Mother tuber of Juvenile | 6.16 |