Gene detail

Detail information of GWHGAAEX015103/evm.TU.scaffold_64.97

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1898	0	Splicing factor 3b, subunit 3
nr	gi\|743791170\|ref\|XP_010923355.1\|	0	PREDICTED: splicing factor 3B subunit 3 [Elaeis guineensis]
Swissprot	tr\|O49552\|DDB1B_ARATH	5.00E-22	DNA damage-binding protein 1b
trEMBL	tr\|M0TZB7\|M0TZB7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P11080_001}
TAIR	AT3G11960	0	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	2034819	2082339	+

Transcript Sequence
>GWHTAAEX015103 CCAACACCTCTACATCCAACCACAGCAGCCCTACTTCACTTGATCAAATAGCCCATTTCGACTGAAGGAGAGGCTCAGAGGCTGATGATGAAGGATTGATGGCCGCCGGAGAAAAGGATTCCGGCAGCGGTAGCCGTCGGGCGGCAACCAAAGCCCGTGCGCACTATCTCGGGAAGCACGTTCTGCGCGGCAGCGCAGTTCTCCACGCTGTCCGGGGTCATTTCCGCTCCCCCACCTCCGATGACGTCGTCTTCGGAAAGGAGACATCGCTGGAGTTGGTGATAATAGATGATGATGGAATTGTACAGTCAATTTGTGAACAACCTGTTTTTGGAATAATAAAAGACCTTGCCATCTTAAGATGGAATGATAAATTTAGGCAATCACGGCAGCAGATGATAGGGAAAGATCTATTGCTGGCTCTTTCTGATTCAGGAAAGCTTTCTTTTCTTGCATTCTCCCTTGAGATGCACAGGTTCCTTGCAGTGCATCATGTACAATTGTCCAAGCCAGGAAATTTGATTCATCAGGTTGGAAGCAAATTGGCTGTTGATTCTGATGGCTCTTTTATTGCAGCTTTCGCATTTGAAGATCGATTTGCTTTGTTTTCCTTGTCCACATATGCTGGTGACAATATCATTGATGAGAAAATGTTCTATCCACCAGAAAACAAAGGTGAAACTGGGCTTTTCAAGGATACTGTTAAGACAAACGTTCGTGGTACAATTTGGAGCATGTGCTTTGTTTCTCATGGCACCGATCATTCAAGCAAAGGATATTATCCAGTACTGGCAACTATAATGCATAGGAAAGCAAGATTAAGGAATGAACTATTGCTGTTTGGATGTACTATAAGAACACGTGCTATTCAATTTATTTCTTCATATCCTGAGGTAGAAATTGGGCCGTTAGCACTTAATATATCTGCTGTTCCTCATCTTTCTGGGTTTGCAGTTGTGTTTAGGATAGGCGATGCTCTTCTAATGGATTTTAGAGATCCATATTGCATACAATGTGTTCAAAGAATAAAGTTTGGATTACCATGTGGGGTTGATGAGCCTGACTCTTTTCATGAGTCTTCTAAAAGTATGGATATTGATGACGAAGGAATGTCTAACGTCGCTGTTTGTGCATTGCTGGAGTTGAGGGATTCGGCTACTGCTATGGCCAAAGATGATGATCCAATGAGTATTGACAATGGTATAGAAATCGCTTCAACTTCCAAGCATGTATGTGCCTGCTGTTGGGAACCTGGTGGTCTAGATAGTCGGAATTTGGTTCTTTGTATGGATGTAGGGGAACTTTACATCCTTAAGATTTGTTCCACAATTGAAGGAGTCAGAGCTGATCTCTCCGATTGCCTCTACAGATGTTCACCCTGTAAGGAGCTTGTTTGGCTGAACAGTGGATTTCTTATGGGACTTGTAGAAATGGGAGATGGTTTTGTTTTAAAACTGTCTAATGGAGGCCTTATGTACAAAAGCAACTTAAAAAATATTTCGCCAATTCTTGATTTATGTGTAGTTGATAATCAGGATGAAAAACAAGATCAATTGTTTTCTTGCTGTGGTATGAGTCCTTTGGGTTCATTAAGAATCTTAAGTATTGGTTTAACTGTGGAGAGGCTTGTGAAAACTCCTCCTATTTATCAAGGTATAACAGGTACTTGGACATTAAGGATGAAAAGAAGTGATACTTATCATTCATTTCTTGTATTATCTTTTGTTGAGGAGACGAGGGTTCTTTCAGTCGGCTTAAGTTTTGTTGATATAACTGATGCCACTGGTTTTAAGCCTGATGTATGTACTCTAGCATGTGGATTGGTGTCTGATGGGTTCCTGGTTCAGATTCATAGGGCAGGCGTGAGATTATGTTTGCCCACTACATCTGCTCATGTGAATGGTTTCTCTCACTTAATACCATTTTGCAACTCTTGGTGCCCCGATAACTTGTCTATCAGTTCAGGTGCAGTGGGGCATAATGTGATTGTTGTAACTACTTCTAATCCTTGCTTTTTATTTGTTGTTGGGGTAAGATCATCATTATCAATGCATCAGAATGAGTTATATGAAATTCAACATTTGATGTTGCAATATGAGATTTCTTGCATATCTATACCCGAACAAGATATTAACTTGGAACAGCTGTCATCAAATGTTCATATTGCCAAGAAAGATAATCAACATGCATTCTGTAGAGGTGATGGATGTCGCCTATTTGTGATTGGTACCCACATACCCTCTATTGAGGTTCTCTCTTTCGCACATGATCAATGCTTTAGGTTCATTGCAACTGGGGTAATTTCGATAGACAATGCATTTGGAACCCCTATAAGTAGCTGCATACCAGAAAATGTTCGTCTTGTGTTTGTTGATAGGTTTTATGTACTCGCAGGCCTGAGGAATGGAATGCTACTCCGGTATGAGTTACCTCAAACATTAGTTTCATCTTCATTTTATTATTTGGCAAAGGAGCAGCATGGGAACTTCAGATGTATTCAGTTACAGTTGATTGCGAGCAGACGTCTTGGTATAACTCCAGTGGTTTTGGTTCCTTTAAGGGATGCACTTGATGCAGATATAGTTGTGCTCAGCGAAATGTCTTGGCTTTTACATGTTGCAAGACACAGCATTGTTTATACATCAATCCCATTCCAACCTGCCACGCATACAACCTCAGTGTCTTCTTTTGATTGCCCAAATGGAATTTTATTTGTTGCTGACAACAGTTTGCATCTGCTTGAACTGGGCCTCAGAAAGAGACTGAATATGTGCAAGTTCTCAATTGAAGGAACTCCTAGAAAGGTATTATACCATAAAGAAAGTAAGACATTGCTAATATTGAGGACGGGCCTTCGAGATGCTTCAATCTCGTCAGACATTTGCCGTGTGGATCCATTTAGTGGTGCTATTTTATCAAAATTCTTATGCGAGCCAGGTGAGACAGCAAAATGTATGCAAATAATGAGGATAGGATATCAGCATCTATTAGTTGTAGGGACTAGTCAGCATCCTGGTCGGACTATCATGCCCAGTGGTGAACCTGAAAGTACAAAGGGACGGCTTATCATATTAAGCTTGGACAATGAACAAAATGCTTTTGAAAGTAATTTGTTGTCCAATTATTCTATTTTTTCATCACCATCTCGGATTTCTTCTTCTCTGCATGAATCTGTTGAGCACCCAATAGAAAAGTTATCAAGTACCAGTGTTGGCAGCAATGCAGATGATTCTACTAGTGACAGACATAAAATTGAAGAAATGGAAGCCGGACAGTTAAGGGTACTTTATCAGAATCAATGGTCGTCTGGTGCTGTTCTTGCTGTCTGCCCATATTTAAATCGTTACCTCTTGGCTTCCGCCGGTAATATTCTAAACGTCTTCTGCTTTGTGGGTGATTATCCTCTGCGGTTGAGAAAGCATTCTATGACCAAGACACGCTTTACCATAACTAGTTTGACTACCTGCTTCACTAGAATTGCTGTTGGTGATTGTCGTGATGGCATTATTTTCTACTCTTATACAGATGATCTTAGGAAATTTGAACAGCTTTATTCTGACCCAGTGCAGAGATTGGTTGCCGATTGCAATCTACTAGATATGGACACTGCTGTAGTCTCAGACCGTAGAGGGAGCATTTCAATTTTGTCAAATGTTAATGATTTAGATGGTAGTGAATGTCCTGAGAAGAACTTGCTGATAAATTGCTCCTTTTACACGGGGGAGTCTGTCATGAGAATCCAGAAGGGTTTATTCTCATATAGACCATCAGTTGATGATACGATTGATGATTCTGATGTCACTGACATAGCGTACACGCCTTCAAATAGTAGTAGCATTGTTGCAAGTACTCTTCTTGGAAGTGTGCTGATCCTTTTTCCTGTTACACGTGAAGAATATTATTTGCTAGAGGCTGTTCAGGCTAGGCTTGCTGTTCACCCTTTAACTGCCCCTGTCCTTGGAAATGATCATAAAGAATTCCGTGGGCGCGGCTCGCAGGCCGGAGTTCCCACAATACTTGATGGAGATATGCTCATCCAGTTCTTAGAGCTGACTTTAATGCAGCAGGAAACTGTTCTCTCCCTTCCCAGTTTTGAGACCACAAACGGTTCGACCTCGACCGGTTCGAATCAAACGCTCTCTGTGAACCGGGTCGTTCAGATTCTTGAGAGAATTCATCACGCAGCCTGACAAGTTTTTGATATTTCCAGTCTTATTTTATCCTCTTTTTT

Network for GWHGAAEX015103

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10433.8	MMS1_N	104	673	1.20E-83
PF03178.14	CPSF_A	931	1317	1.70E-29

Protein Sequence

>GWHPAAEX015103
MAAGEKDSGSGSRRAATKARAHYLGKHVLRGSAVLHAVRGHFRSPTSDDVVFGKETSLELVIIDDDGIVQSICEQPVFGIIKDLAILRWNDKFRQSRQQMIGKDLLLALSDSGKLSFLAFSLEMHRFLAVHHVQLSKPGNLIHQVGSKLAVDSDGSFIAAFAFEDRFALFSLSTYAGDNIIDEKMFYPPENKGETGLFKDTVKTNVRGTIWSMCFVSHGTDHSSKGYYPVLATIMHRKARLRNELLLFGCTIRTRAIQFISSYPEVEIGPLALNISAVPHLSGFAVVFRIGDALLMDFRDPYCIQCVQRIKFGLPCGVDEPDSFHESSKSMDIDDEGMSNVAVCALLELRDSATAMAKDDDPMSIDNGIEIASTSKHVCACCWEPGGLDSRNLVLCMDVGELYILKICSTIEGVRADLSDCLYRCSPCKELVWLNSGFLMGLVEMGDGFVLKLSNGGLMYKSNLKNISPILDLCVVDNQDEKQDQLFSCCGMSPLGSLRILSIGLTVERLVKTPPIYQGITGTWTLRMKRSDTYHSFLVLSFVEETRVLSVGLSFVDITDATGFKPDVCTLACGLVSDGFLVQIHRAGVRLCLPTTSAHVNGFSHLIPFCNSWCPDNLSISSGAVGHNVIVVTTSNPCFLFVVGVRSSLSMHQNELYEIQHLMLQYEISCISIPEQDINLEQLSSNVHIAKKDNQHAFCRGDGCRLFVIGTHIPSIEVLSFAHDQCFRFIATGVISIDNAFGTPISSCIPENVRLVFVDRFYVLAGLRNGMLLRYELPQTLVSSSFYYLAKEQHGNFRCIQLQLIASRRLGITPVVLVPLRDALDADIVVLSEMSWLLHVARHSIVYTSIPFQPATHTTSVSSFDCPNGILFVADNSLHLLELGLRKRLNMCKFSIEGTPRKVLYHKESKTLLILRTGLRDASISSDICRVDPFSGAILSKFLCEPGETAKCMQIMRIGYQHLLVVGTSQHPGRTIMPSGEPESTKGRLIILSLDNEQNAFESNLLSNYSIFSSPSRISSSLHESVEHPIEKLSSTSVGSNADDSTSDRHKIEEMEAGQLRVLYQNQWSSGAVLAVCPYLNRYLLASAGNILNVFCFVGDYPLRLRKHSMTKTRFTITSLTTCFTRIAVGDCRDGIIFYSYTDDLRKFEQLYSDPVQRLVADCNLLDMDTAVVSDRRGSISILSNVNDLDGSECPEKNLLINCSFYTGESVMRIQKGLFSYRPSVDDTIDDSDVTDIAYTPSNSSSIVASTLLGSVLILFPVTREEYYLLEAVQARLAVHPLTAPVLGNDHKEFRGRGSQAGVPTILDGDMLIQFLELTLMQQETVLSLPSFETTNGSTSTGSNQTLSVNRVVQILERIHHAA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12830	SF3B3, SAP130, RSE1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.910
SRP064423	SRR2545915	Juvenile tuber	26.370
SRP108465	SRR5643513	five period of Gastrodia elata	15.930
	SRR5643514	five period of Gastrodia elata	19.930
	SRR5643515	five period of Gastrodia elata	15.930
	SRR5643524	five period of Gastrodia elata	17.460
	SRR5643525	five period of Gastrodia elata	10.360
	SRR5643528	five period of Gastrodia elata	8.730
	SRR5643658	five period of Gastrodia elata	9.810
	SRR5643659	five period of Gastrodia elata	14.700
	SRR5643660	five period of Gastrodia elata	15.840
	SRR5643661	five period of Gastrodia elata	12.920
	SRR5643662	five period of Gastrodia elata	11.910
	SRR5643663	five period of Gastrodia elata	14.410
	SRR5643664	five period of Gastrodia elata	14.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.960
SRP279888	Gastro	Gastrodia elata tuber	17.63
	Juven	Juvenile tuber	20.28
	Mother_Gastro	Mother tuber of Gastrodia elata	20.91
	Mother_Juven	Mother tuber of Juvenile	22.00