Detail information of GWHGAAEX015104/evm.TU.scaffold_64.98


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|183221265|ref|YP_001839261.1|2.00E-13RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOGKOG01182.00E-67FOG: RRM domain
nrgi|743825048|ref|XP_010932937.1|2.42E-88PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Elaeis guineensis]
Swissprottr|Q9LHP2|SL30A_ARATH5.00E-68Serine/arginine-rich SC35-like splicing factor SCL30A
trEMBLtr|A0A068V7Q4|A0A068V7Q4_COFCA2.00E-84Coffea canephora
TAIRAT3G135702.00E-67SC35-like splicing factor 30A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006720837422089621+
Transcript Sequence

Network for GWHGAAEX015104

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11131827.70E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12900FUSIP1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.490
SRR2545915Juvenile tuber40.220
SRP108465SRR5643513five period of Gastrodia elata48.340
SRR5643514five period of Gastrodia elata38.270
SRR5643515five period of Gastrodia elata45.180
SRR5643524five period of Gastrodia elata40.020
SRR5643525five period of Gastrodia elata52.940
SRR5643528five period of Gastrodia elata56.920
SRR5643658five period of Gastrodia elata47.670
SRR5643659five period of Gastrodia elata71.260
SRR5643660five period of Gastrodia elata80.940
SRR5643661five period of Gastrodia elata81.840
SRR5643662five period of Gastrodia elata91.820
SRR5643663five period of Gastrodia elata64.860
SRR5643664five period of Gastrodia elata66.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_171.170
SRR6049655Rhizomagastrodiae_C368-T10_good_199.120
SRR6049656Rhizomagastrodiae_C368-T07_good_179.060
SRR6049657Rhizomagastrodiae_C368-T07_good_162.350
SRR6049658Rhizomagastrodiae_C368-T04_good_183.040
SRR6049659Rhizomagastrodiae_C368-T04_good_176.350
SRR6049660Rhizomagastrodiae_C368-T01_good_185.210
SRR6049661Rhizomagastrodiae_C368-T04_good_177.730
SRR6049662Rhizomagastrodiae_C368-T01_good_192.980
SRR6049663Rhizomagastrodiae_C368-T01_good_193.700
SRR6049664Rhizomagastrodiae_C368-T10_good_183.240
SRR6049665Rhizomagastrodiae_C368-T10_good_183.240
SRP279888GastroGastrodia elata tuber 87.46
JuvenJuvenile tuber39.68
Mother_GastroMother tuber of Gastrodia elata 63.42
Mother_JuvenMother tuber of Juvenile 36.79