Detail information of GWHGAAEX015105/evm.TU.scaffold_64.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695050643|ref|XP_009413316.1| | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase 4-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q94CD8|E134_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 4 (Precursor) |
| trEMBL | tr|M0TQP0|M0TQP0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P15370_001} |
| TAIR | AT3G13560 | 0 | O-Glycosyl hydrolases family 17 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 2090998 | 2098200 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015105
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00332.17 | Glyco_hydro_17 | 46 | 367 | 2.00E-81 |
| PF07983.12 | X8 | 384 | 455 | 5.10E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K19892 | GN4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.350 |
| SRR2545915 | Juvenile tuber | 15.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.470 |
| SRR5643514 | five period of Gastrodia elata | 11.070 | |
| SRR5643515 | five period of Gastrodia elata | 16.830 | |
| SRR5643524 | five period of Gastrodia elata | 9.340 | |
| SRR5643525 | five period of Gastrodia elata | 6.980 | |
| SRR5643528 | five period of Gastrodia elata | 7.200 | |
| SRR5643658 | five period of Gastrodia elata | 5.030 | |
| SRR5643659 | five period of Gastrodia elata | 19.240 | |
| SRR5643660 | five period of Gastrodia elata | 14.860 | |
| SRR5643661 | five period of Gastrodia elata | 19.850 | |
| SRR5643662 | five period of Gastrodia elata | 22.910 | |
| SRR5643663 | five period of Gastrodia elata | 22.150 | |
| SRR5643664 | five period of Gastrodia elata | 12.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.73 |
| Juven | Juvenile tuber | 16.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.06 | |
| Mother_Juven | Mother tuber of Juvenile | 6.74 |