Detail information of GWHGAAEX015106/evm.TU.scaffold_64.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15889610|ref|NP_355291.1| | 3.00E-97 | ATP-dependent RNA helicase [Agrobacterium fabrum str. C58] |
| KOG | KOG0335 | 0 | ATP-dependent RNA helicase |
| nr | gi|743791115|ref|XP_010923340.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Elaeis guineensis] |
| Swissprot | tr|Q84W89|RH37_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 37 |
| trEMBL | tr|F6HLF4|F6HLF4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55215.1} |
| TAIR | AT2G42520 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 2110138 | 2132464 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015106
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 189 | 369 | 1.90E-50 |
| PF00271.30 | Helicase_C | 404 | 519 | 1.00E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11594 | DDX3X, bel | RIG-I-like receptor signaling pathway | map04622 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 81.350 |
| SRR2545915 | Juvenile tuber | 46.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.550 |
| SRR5643514 | five period of Gastrodia elata | 59.880 | |
| SRR5643515 | five period of Gastrodia elata | 67.120 | |
| SRR5643524 | five period of Gastrodia elata | 60.840 | |
| SRR5643525 | five period of Gastrodia elata | 65.910 | |
| SRR5643528 | five period of Gastrodia elata | 87.960 | |
| SRR5643658 | five period of Gastrodia elata | 69.850 | |
| SRR5643659 | five period of Gastrodia elata | 75.950 | |
| SRR5643660 | five period of Gastrodia elata | 95.040 | |
| SRR5643661 | five period of Gastrodia elata | 91.000 | |
| SRR5643662 | five period of Gastrodia elata | 81.780 | |
| SRR5643663 | five period of Gastrodia elata | 82.230 | |
| SRR5643664 | five period of Gastrodia elata | 82.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 54.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 61.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 62.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 64.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 74.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 74.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 74.07 |
| Juven | Juvenile tuber | 69.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.84 | |
| Mother_Juven | Mother tuber of Juvenile | 88.13 |