Gene detail

Detail information of GWHGAAEX015110/evm.TU.scaffold_64.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383455371\|ref\|YP_005369360.1\|	2.00E-08	hypothetical protein COCOR_03385 [Corallococcus coralloides DSM 2259]
KOG	KOG0620	0	Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins
nr	gi\|743791087\|ref\|XP_010923332.1\|	0	PREDICTED: carbon catabolite repressor protein 4 homolog 1-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8W0Z9\|CCR4A_ARATH	0	Carbon catabolite repressor protein 4 homolog 1
trEMBL	tr\|A0A061F4X8\|A0A061F4X8_THECC	0	DNAse I-like superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY09579.1}
TAIR	AT3G58560	0	DNAse I-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	2163945	2181846	-

Transcript Sequence
>GWHTAAEX015110 ATGCTGAGCGTGCTGCGAGTTCATCTTCCGTCTGATATCCCTGTGGTTGGCTGCGAGATCACGCCTTACGTTCTTCTCAGGCGTCCGGATAAATCTGTTTCCAATGAGGATGTCACCGAGGTAGCACCCGTTGGGGGTTGCTACATGCGATATAAATGGTATCGCATTCAAACTGACAAGAATGTCAATGTTTGCAGCATCCATCCTTCTGAATCAGCAACTCTGCAGTGCATCGTTTGCCTCAAGGCCAAAGTGCCCACTGCCAAGAGCTTCCACTGTACATCCAAATGTTTCTCAGATGCTTGGCAACACCACCTTGTTTTGCATGAGCGAGCTAGCAGTGCTATAAATGAAACAGGAAATGAGGAAGAATTATTTGGACGATTTAGTAGCAATGTTTCAGGTGCATCAAATTTGAACAATACTTCTTCACCTCTATATCCTACAGGTATTTCTGAAAGGAGTGGTGGTGAAACCTGGGTTGAGGTCGGCCGTTCTAGAACCTATACTCCCACTTCTGATGACATCGGCCATGTTTTAAAGTTTGAATGCTTTCCAGTAGATTTAGAAACTAAAATACCTGTTGGAAGCTCATGCACAGTTACAACATCACGTGTAATTCCGGCCCCGTCTCCTTGCCCTCGGCGCATGATTAAAATCGGTGGTGCTGATTTTATCGGGCATATGGATCATGATGGTCGGAGTGCGTCCTTCGGCACCTTTACAGTGCTGTCATATAACATTCTTGCTGATCAGCATGCCTCAAGTGACCTATACAGCTACTGCCCTTCTTGGGCCCTTACTTGGCCTTATCGGAGGCAGAACCTATTGAAAGAAATCATCGACTACCGTGCTGATATTGTTTGTCTTCAAGAGGTCCAAAGTGATCATTTTGAGGAATTTTTTTCTCCAGAACTTGATAAGCATGGTTATCAGGCATTTTTCAAGAAGAAGACAACAGAGGCTTATAGCGGTAATATGAATACAGTTGATGGTTGTGCCACATTTTTCCGCAGAGATCGGTTTTCACATGTTAAAAAATACGAAGTTGAATTCAACAAGGCTGCACAATCTTTGACCGATGCTGTGATCCAACATGGTCAGAAGAAACTTGCTTTAAACCGTTTGATTAAGGACAATATTGCTTTGATTGTAGTCTTGGAGGAAAAGCTCAGCAGCCACGGTATTGATAATCTTGGCCAAAGGCAGCTTTTGTGTATTGCGAATACTCAAGTGAACGTTCATCAAGATCACAAAGATGTGAAACTATGGCAGGTGCACACTCTTTTAAAAGGATTGGAGAAAATTGCTGTCAGCGCAGACATTCCCATGCTAGTGTGCGGGGATTTTAATTCAGTTCCGGGAAGCGCATCTCATTCTCTCCTGGCAATGGGAAAGGTTGATCAACTGCATCCTGACTTGGGAATAGACCCCCTTGGCATATTGCGCCCTCCAAACAAATTAAACCATCAACTCCCACTGGTCAGCGCTTATTCAACTTTTGCCAGGATGGTGGGAGCCGGCCTTGCTTTGGAGTTGCAGCGAAGGAAGATGGACCCCACAACAAATGAACCTCTCTTTACCAATTGCACAAGAGATTTCATCGGCACCGTGGACTACATATTTTACACCGCAGACTCTTTAACTGTGGAGTCATTACTAGAGCTGTTGGATGAGAGCAGCTTACGCAAAGACACGGCCCTCCCTTCCCCAGAGTGGTCGTCAGCTCACATTGCCCTTTTGGCGGGGTTCCGATGCAAGCCTAGGACCAGGCGTTAG

Network for GWHGAAEX015110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15801.4	zf-C6H2	72	110	1.80E-07
PF03372.22	Exo_endo_phos	244	575	9.20E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12603	CNOT6, CCR4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	93.130
SRP064423	SRR2545915	Juvenile tuber	69.820
SRP108465	SRR5643513	five period of Gastrodia elata	37.780
	SRR5643514	five period of Gastrodia elata	42.340
	SRR5643515	five period of Gastrodia elata	40.430
	SRR5643524	five period of Gastrodia elata	37.000
	SRR5643525	five period of Gastrodia elata	55.260
	SRR5643528	five period of Gastrodia elata	41.250
	SRR5643658	five period of Gastrodia elata	61.040
	SRR5643659	five period of Gastrodia elata	51.250
	SRR5643660	five period of Gastrodia elata	60.490
	SRR5643661	five period of Gastrodia elata	54.690
	SRR5643662	five period of Gastrodia elata	64.830
	SRR5643663	five period of Gastrodia elata	57.130
	SRR5643664	five period of Gastrodia elata	68.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	79.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	66.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	80.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	92.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	92.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	79.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	82.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	62.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	74.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.340
SRP279888	Gastro	Gastrodia elata tuber	66.99
	Juven	Juvenile tuber	57.72
	Mother_Gastro	Mother tuber of Gastrodia elata	51.75
	Mother_Juven	Mother tuber of Juvenile	39.10