Gene detail

Detail information of GWHGAAEX015117/evm.TU.scaffold_64.111

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1548	6.00E-179	Transcription elongation factor TAT-SF1
nr	gi\|695053852\|ref\|XP_009415034.1\|	0	PREDICTED: HIV Tat-specific factor 1 homolog [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9AST1\|TAF15_ARATH	9.00E-07	Transcription initiation factor TFIID subunit 15
trEMBL	tr\|M0TUK1\|M0TUK1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P28980_001}
TAIR	AT5G16260	6.00E-179	RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	2333106	2382326	+

Transcript Sequence
>GWHTAAEX015117 CCCTAAATCGCAAGCTAGCAGCCTCCATTCGCGCCGATCCTTGATCTCCCGACATCCATTCACGCCGGCCCTTCTCCTTCCTCACTCGAATGTCGCTCCTTATTGAACTCGCCTCTTCCTTCCTTTGAAGAATCGCCGATCCTTCTCCTACCTTGGAGAACTCATCGATTTCTCCATCTTCACCCTCCATGCGGGTTGATTTTAAGCATGGAGAATGACAGTACTGGAAATTCAGTGATTTGCAATGAAGTGGGCTGGTACATTCTCGGGCCGAATCAAGAGCAACTGGGACCGTATGCTTTTTCAGAGTTGCAGGAGCATTTTGCAAATGGGTACATTTTAGAGAGCACCTTGCTATGGTCAGAAGGGAAAAGTGAATGGCTGCCACTCTCTTCAATTCCTGAGCTTTTTGCAGACCTGCATGTTCATACTTATGATAACTTTACTGAGGGTGAAGGAATATCAGGTAGCGAGGATGATTTTGCAATATGGCAGAAAGAGATCAGTGAGGTCGAAGCTGTGAAACATGGAAGGGCAACTGTTGTCCACAGTAACATTGAGGAATTACAGAAAGAAGTAGGAATTACCACTGACGATAGGCCGATGACTCCACCAGGCGGAGAGGAAGAGTTCACGGATGATGATGGGACTGTTTACAAATGGGATCTTGGTCTAAGAGCTTGGGTTCCTCAAGATAATATTACTGCTACAGAGGTGTATGGACCTGAAGAGATGACTTTCTTGTATGATGAGGAAGTATTCCCAACTTTTGATATTGCCAATTTCCCCGTAGTTGAAGGAGCGGTCACTTCTACTGAGAAAGTAGAAATGTCGTCCAAAGCTGAAAAAGAGTCTGAAGCTGAGAATAAGTCTGAACCTGAAAAGATGTCTGAGAAAAAGAGAAAGTTAACTGAGAATTCCAGCCAAAAAAAGGAATCAAATAAAGCTCCAGATAGTTGGTTTGATTTAAAGATTAACACACATGTTTATGTTACTGGTTTGCCAGATGATATTACTGCTGAGGAGGTTGTCGAAGTGTTTTCCAAGTGTGGATATATTAAAATTGATCCTGACACCAAAAAACCTCGTGTGAAGATATATTTGGACAAAGAAACTGGAAGAGTAAAAGGAGATGCACTTGTTACATTTATGAAGGAACCATCTGTTGCATTAGCAGTCCAAATTTTGGATGGTGCACCTTTCCGTGCTGGTGGGAACATCCCTATGTCAGTAACACAGGCCAAATTTGAACAAAAAGGAGAGAAATTTATTACTAAACAACTGGATGCGACCAGAAAAAAAAAACTCAAGAAAGTTGAAGAGAAAATGCTTGGGTGGGGTGGTCGTGATGATGCAAAACTGTTGATCCCAGCTACTGTTATCCTGTGGAATATGTTTACTCCTGCTGAATTAAGAGCAGATGAGACTCTCCTTTCAGAGCTTGAGGCTGATGTGCGAGAAGAATGTGCTACTTTAGGTCCAGTTGATTCTATTAAGGTCTGTGAGAATCATCCGCAAGGTGTTGTGTTAGTTAAATTCAAGGATCGGAAGGATGCCTTAAGTTGCATCGAGCTCATGAATGGAAGATGGTTTGGAGGAAAACAAATAATTGCAAGTGAAGATGATGGAAGAATCAATCATGCCCGCATTCGTGACTACGAAGCTGATGCAGAGAGATTGGAGCAGTTTTCTGCAGAGCTCGAAGCTGACTGAAGCAACCATTATAATGGTTCGATTTTCTTACTTAGGTAGGGATACTGTTCGACTTTATTGCCCCAATGCTGTCGATGAGTGCTGCTGCTGCGACAAGCTTAAATAAACAATGAATTTTTGATGAGGCAGCATTTAGAGTGTTGAAATGCACTTTGCTTATGTTTTATTGAAGTTTTAGCTTAATTATTTGTACTGTAAGCATTCACAATACAGTATTACATATTGGGCTATTGAAAAGTTTCTGTTTATATATTATTTAGTATTTTAAGGCTTTGTGCGCATTACAACTTAATTTGTTCTCTTATGATTGAATTAAACATTTTGTATCA

Network for GWHGAAEX015117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14237.5	DUF4339	17	61	4.70E-12
PF00076.21	RRM_1	260	332	1.40E-06
PF00076.21	RRM_1	413	467	4.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.240
SRP064423	SRR2545915	Juvenile tuber	31.760
SRP108465	SRR5643513	five period of Gastrodia elata	42.600
	SRR5643514	five period of Gastrodia elata	41.880
	SRR5643515	five period of Gastrodia elata	37.570
	SRR5643524	five period of Gastrodia elata	41.460
	SRR5643525	five period of Gastrodia elata	35.620
	SRR5643528	five period of Gastrodia elata	40.740
	SRR5643658	five period of Gastrodia elata	34.790
	SRR5643659	five period of Gastrodia elata	40.900
	SRR5643660	five period of Gastrodia elata	46.430
	SRR5643661	five period of Gastrodia elata	42.920
	SRR5643662	five period of Gastrodia elata	38.090
	SRR5643663	five period of Gastrodia elata	40.350
	SRR5643664	five period of Gastrodia elata	39.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.180
SRP279888	Gastro	Gastrodia elata tuber	50.31
	Juven	Juvenile tuber	39.56
	Mother_Gastro	Mother tuber of Gastrodia elata	37.22
	Mother_Juven	Mother tuber of Juvenile	33.97