Gene detail

Detail information of GWHGAAEX015118/evm.TU.scaffold_64.112

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743791019\|ref\|XP_010923312.1\|	PREDICTED: uncharacterized protein LOC105046429 [Elaeis guineensis]
trEMBL	tr\|A0A067LA50\|A0A067LA50_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP44108.1}
TAIR	AT1G07910	RNAligase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	2384656	2494105	-

Transcript Sequence
>GWHTAAEX015118 ATGAACTTAGGAGTCGCTGGATGGAACGGCGAATCCCTTGAGGCGCCGTCATTAGCGACTCGGTCACTATTCAGCCACATGTCTTCTTCCCATCACCGTCTCCTCTGCACCCTCTTCTTTGCCGGCTCTTCATCCTTCAAACCCTCGCGCCATTCTTCCGTCCTCTACCTCTGCCGCCTCAATTTCTGCTCACAACCCCCTCTCCACCCCGCCCGTTTCTTCTCCTCCGCAATATCACCGCTCACCATGCCCTTCAACCACCGCGGACGCCGCGCGGCTAGGGAACGTCAGCAGTGGAAGGAGAAGACCCGTGATGCATCCGTCAATTTCGTTGGGGAGGGCATTGAAAATCTGAGCATTGCGAAATCGGCTGGAGGTAATGATCATAGTAGTAATATAGGTGCCAGTTCTAGCGGCAGCTCTTCTTCTCTGCAGTTCGGGACGATTCCGACAGCCATGGGCAGTTCGATCGCGACGGGGCGGCAGCGGGGTGTGTGGCTGCCTAAATGTTACACAACGGCATCTGGGACGTCGGCATCTGCCGAGGTTTTGAGCACGAAGAAGGACGGTGCAGCGAACATGGCTGGATTATTTCAGAGCCAGTTGACTGAGAACTTCGTCGTGGATAACAATACATTTTCCAGAGCGCAGATTCGTGCGACGTTCTATCCAAAATTCGAAAACGAGAAATCGGACCAAGAGATAAGGGCAAGGATGATTGATATAGTCAACCATGGAATGGCTACACTAGAGGTATCATTGAAGCACTCTGGATCTCTATTTATGTATGCTGGCCATCTTGGTGGAGCTTATGCTAAAAACAGCTTTGGAAACATATACACAGCAGTTGGTGTATTTGTCCTCGCTAGAATGTTCCAAGAGGCTTGGGGTACTGCAGCAAGCGAAAAGCAATTAGAGTTCAATAATTTTTTGGAGAAAAATCGTATATGTATATCCATGGAGTTGGTTACTGCAGTATTGGGGGACCACGGTCAGCGACCCATCGATGATTACGTTGTTGTGACTGCTGTAACTGAATTGGGAGATGGAAAACCTAAATTTTTTTCTACCCCTGAAGTCATTGCATTTTGTCGCAAATGGCGCTTACCAACAAATCATGTTTGGCTATTCTCTACGAGGAAATCTGTCACCTCCTTCTTTGCTGCCTATGATGCTTTGTGTGAAGAGGGAACTGCTACTCCCGTGTGTCAGGCTCTTGATGAGGTTGCTGAAATATCTGTGCCGGGTTCAAAGAATCATATCAAAGCTCAGGGTGAAATTTTGGAGGGTTTGGTTGCTCGTATTGTTAACCCTGATAGCTCAGAGCAGATGAAAAACGTTCTGAAAGAGTGTCCTCCTCCACCCCTTGATGGACTTGGCCTAGAGTTGGGACCAAACTTGCGTGAAGTTTGTGCAACTAATAGGGGTGATGAAAAGCAGCAAATAAAAGCGCTGCTTGAAAGTGCTGGAATTTCAATGTGTCCAGACTACTCAGATTGGTCTGGTGATGGCGTTGGTGGCCATTCTCGAAGTAGTGATCAAGCTGTCCTTTCCAAATTTTTACAAGCTCACCCTGCAGACTATTCAACTACAAAGTTACAGGAAATGATACGCTTGATGAAAGAAAGACATTTTCCTGCTGCATTTAAGTGTAACCGGAACTTCCACAAAATAAAGTCTGTTTCAAAGGACCATCTTTACTACAAAATGGTCATCCATGTGCATAGTGACTCAGCCTTTCGTAGATATCAGCAAGAAATGAGGCGAAATCAAGGGTTATGGCCCCTTTACCGAGGCTTTTTTGTCGACATTGATTTATTTAAGGTACAGAATGAGAAGGCTTTCGAACATGCAAATGAAAGCAATGTTAGGCTAAATAATTTGAACAATAGTTGTGCTTCAAGTACAGAAACAGATGGTCTAGCCGATGATGATGCAAATTTGATGATCAAATTGAAATTTCTTACTTATAAGCTTCGCACTTTTTTAATTCGCAATGGTTTATCTATGCTTTTCAAAGATGGCCCGTCGGCTTATAAGACATACTATTTAAGACAAATGAAAATCTGGGGAACATCAGCTGGCAAGCAGAGAGAGATGAGTAAAATGCTGGATGAATGGGCAGCTTATATTATAAGGAAGCTTGGAAAAAAACATTTGTCATCATCAACCTATCTTTCTGAAGCTGAACCATTTCTTGAGCAGTATGCTAGGCGGAGTCCACAGAATCAGATTTTGATAGGATCTGCTGGAAATTTTGTCAAGGCTGAAAATTTCCAGGCCATCATTGAAGGAAGCAGAGATGAAGAGGGTGATCTTCATCCTGATGTGGATTCAGAAAGTTCTAGCGCTAGTACCTCAAAATTTGACATGGTTACAAAAGATGAAGGCCTTATTGTGTTTTTTCCTGGCATACCTGGCTGTGCCAAGTCTGCTCTATGCAAAGAAATATTAAATACTCCTGGCACGTTTGGAGACAATCGTACTGTGCATAGTTTGATGGGCGATATTATCAAAGGGAAATACTGGCCTAAAGTAGCTGAAGAGTGCAAGAAAAAACCGTATTCAATTACTCTAGCTGACAAAAATGCTCCTAATGAGGAAGTGTGGAGTCTGATTGAGGATCTGTGTCGGAGCACAAAAGCATCTGCTATTCCAGTTGTTTCTGACTCTGAAGGAACCATTTCAAACCCCTTTTGTCTCGATGCTCTCGCTGTTTTCATGTTTCGTGTGCTCCAGCGAGTTAATCACCCGGGAAATCTGGACAAGTCATCTCCAAATGCTGGTTATGTCCTGCTTATGTTTTATAAACTTTATGATGGCAAGGCATGTTGCATCTTTTTTTCTTCTAGATATTTTGTAATTAAAATGCAAATCATTATCATTCATTATAAGTTCTGCTTTCTCCAGAATAGGAAAGAATTTGAGAGCGAATTAACAGAAAGATTTGGTGCTCTTGTCAAGATGCCGTTGCTGAAAACTGACAGGGAACCGCTACCTGATAATTTGAGGAGTGCACTTGAGGAAGGTTTAAATCTCTATAGGATTCACAGAAGCAAGCATGGAAGGTTGGAACCAAACAAAGGATCATATGCGAAGCAGTGGGCGCAGTGGGAGAACTGTATTCGAGAGTCCCTGTTTAGAAAAGCAGATTATCTCAACTCAATCCAGGTTCCATTTGAGATAGCTGCTAAGCAAGTCATTGAACAACTCAAAGTTGTCACCAAAGGAGGAATTCGAACACCAGAATCTGTTAAGAGAAGATTTGGCAACCTTGTCTTTGCAGCTGTCACACTGCCTGTGCATGAGATTAAAGTTCTATTAGAGAAGTTGGCCAAAGAAGAGTTCCCCGTGAAAGTGTTCCTAGAAGGCAAAGGATTGGAGAGCAATCTGGCAAAGGCTCACGTAACCTTGGCTCACAAAAAGAGCCATGGGGTGATAGCTGTGGCCAGCTACGGCATTCACCACCATGAGAGAGTCCCCGTCGAGCTCCTCGCCCTGATATTCTCCGAGAAATTGGCTGCCCTCGAGGTGAATGTTGGATCCATCGGCGGCGAAAAAGTAGCCTCGAAGAATAAGTGGCCTCACGCGACAATTTGGACGGGAGATGGAGCTTCGGCGTATGAAGCCAATGCCTTGCCGCAGCTGCTTTCTGAAGGCAGAGCAACCAGGGTGGAAATCAACCCTCCTTTCACTGTGGAAGGTGTGGTGGATTTCTATTGA

Network for GWHGAAEX015118

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX015118
MNLGVAGWNGESLEAPSLATRSLFSHMSSSHHRLLCTLFFAGSSSFKPSRHSSVLYLCRLNFCSQPPLHPARFFSSAISPLTMPFNHRGRRAARERQQWKEKTRDASVNFVGEGIENLSIAKSAGGNDHSSNIGASSSGSSSSLQFGTIPTAMGSSIATGRQRGVWLPKCYTTASGTSASAEVLSTKKDGAANMAGLFQSQLTENFVVDNNTFSRAQIRATFYPKFENEKSDQEIRARMIDIVNHGMATLEVSLKHSGSLFMYAGHLGGAYAKNSFGNIYTAVGVFVLARMFQEAWGTAASEKQLEFNNFLEKNRICISMELVTAVLGDHGQRPIDDYVVVTAVTELGDGKPKFFSTPEVIAFCRKWRLPTNHVWLFSTRKSVTSFFAAYDALCEEGTATPVCQALDEVAEISVPGSKNHIKAQGEILEGLVARIVNPDSSEQMKNVLKECPPPPLDGLGLELGPNLREVCATNRGDEKQQIKALLESAGISMCPDYSDWSGDGVGGHSRSSDQAVLSKFLQAHPADYSTTKLQEMIRLMKERHFPAAFKCNRNFHKIKSVSKDHLYYKMVIHVHSDSAFRRYQQEMRRNQGLWPLYRGFFVDIDLFKVQNEKAFEHANESNVRLNNLNNSCASSTETDGLADDDANLMIKLKFLTYKLRTFLIRNGLSMLFKDGPSAYKTYYLRQMKIWGTSAGKQREMSKMLDEWAAYIIRKLGKKHLSSSTYLSEAEPFLEQYARRSPQNQILIGSAGNFVKAENFQAIIEGSRDEEGDLHPDVDSESSSASTSKFDMVTKDEGLIVFFPGIPGCAKSALCKEILNTPGTFGDNRTVHSLMGDIIKGKYWPKVAEECKKKPYSITLADKNAPNEEVWSLIEDLCRSTKASAIPVVSDSEGTISNPFCLDALAVFMFRVLQRVNHPGNLDKSSPNAGYVLLMFYKLYDGKACCIFFSSRYFVIKMQIIIIHYKFCFLQNRKEFESELTERFGALVKMPLLKTDREPLPDNLRSALEEGLNLYRIHRSKHGRLEPNKGSYAKQWAQWENCIRESLFRKADYLNSIQVPFEIAAKQVIEQLKVVTKGGIRTPESVKRRFGNLVFAAVTLPVHEIKVLLEKLAKEEFPVKVFLEGKGLESNLAKAHVTLAHKKSHGVIAVASYGIHHHERVPVELLALIFSEKLAALEVNVGSIGGEKVASKNKWPHATIWTGDGASAYEANALPQLLSEGRATRVEINPPFTVEGVVDFY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.220
SRP064423	SRR2545915	Juvenile tuber	45.270
SRP108465	SRR5643513	five period of Gastrodia elata	34.060
	SRR5643514	five period of Gastrodia elata	40.180
	SRR5643515	five period of Gastrodia elata	41.040
	SRR5643524	five period of Gastrodia elata	41.300
	SRR5643525	five period of Gastrodia elata	23.560
	SRR5643528	five period of Gastrodia elata	25.870
	SRR5643658	five period of Gastrodia elata	25.320
	SRR5643659	five period of Gastrodia elata	29.320
	SRR5643660	five period of Gastrodia elata	30.990
	SRR5643661	five period of Gastrodia elata	28.530
	SRR5643662	five period of Gastrodia elata	28.740
	SRR5643663	five period of Gastrodia elata	30.340
	SRR5643664	five period of Gastrodia elata	32.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.830
SRP279888	Gastro	Gastrodia elata tuber	24.13
	Juven	Juvenile tuber	33.41
	Mother_Gastro	Mother tuber of Gastrodia elata	41.36
	Mother_Juven	Mother tuber of Juvenile	42.96