Detail information of GWHGAAEX015129/evm.TU.scaffold_64.124
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262193501|ref|YP_003264710.1| | 9.00E-65 | SNF2-like protein [Haliangium ochraceum DSM 14365] |
| KOG | KOG0383 | 0 | Predicted helicase |
| nr | gi|743882519|ref|XP_010909175.1| | 0 | PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 0 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|A0A061DXR9|A0A061DXR9_THECC | 0 | Chromatin remodeling complex subunit {ECO:0000313|EMBL:EOX96881.1} |
| TAIR | AT5G44800 | 0 | chromatin remodeling 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 2712161 | 2738244 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015129
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00628.28 | PHD | 76 | 119 | 1.60E-07 |
| PF00385.23 | Chromo | 665 | 698 | 3.30E-08 |
| PF00176.22 | SNF2_N | 767 | 1043 | 6.40E-58 |
| PF00271.30 | Helicase_C | 1067 | 1180 | 9.30E-17 |
| PF06465.12 | DUF1087 | 1363 | 1398 | 1.30E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.530 |
| SRR2545915 | Juvenile tuber | 25.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.020 |
| SRR5643514 | five period of Gastrodia elata | 14.470 | |
| SRR5643515 | five period of Gastrodia elata | 11.990 | |
| SRR5643524 | five period of Gastrodia elata | 14.350 | |
| SRR5643525 | five period of Gastrodia elata | 13.620 | |
| SRR5643528 | five period of Gastrodia elata | 12.240 | |
| SRR5643658 | five period of Gastrodia elata | 13.280 | |
| SRR5643659 | five period of Gastrodia elata | 12.510 | |
| SRR5643660 | five period of Gastrodia elata | 15.540 | |
| SRR5643661 | five period of Gastrodia elata | 12.080 | |
| SRR5643662 | five period of Gastrodia elata | 12.500 | |
| SRR5643663 | five period of Gastrodia elata | 12.900 | |
| SRR5643664 | five period of Gastrodia elata | 13.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.65 |
| Juven | Juvenile tuber | 23.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.90 | |
| Mother_Juven | Mother tuber of Juvenile | 22.51 |