Detail information of GWHGAAEX015130/evm.TU.scaffold_64.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-78 | FOG: PPR repeat |
| nr | gi|672143799|ref|XP_008795784.1| | 8.19E-179 | PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FND7|PP410_ARATH | 4.00E-81 | Putative pentatricopeptide repeat-containing protein At5g40405 |
| trEMBL | tr|F6HEZ0|F6HEZ0_VITVI | 7.00E-129 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51050.1} |
| TAIR | AT1G33350 | 1.00E-78 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 2750742 | 2752103 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015130
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 124 | 157 | 3.10E-07 |
| PF01535.19 | PPR | 159 | 187 | 8.20E-05 |
| PF13041.5 | PPR_2 | 259 | 305 | 5.10E-11 |
| PF13812.5 | PPR_3 | 358 | 389 | 0.0038 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.770 |
| SRR2545915 | Juvenile tuber | 2.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.560 |
| SRR5643514 | five period of Gastrodia elata | 5.100 | |
| SRR5643515 | five period of Gastrodia elata | 4.350 | |
| SRR5643524 | five period of Gastrodia elata | 4.730 | |
| SRR5643525 | five period of Gastrodia elata | 5.610 | |
| SRR5643528 | five period of Gastrodia elata | 3.720 | |
| SRR5643658 | five period of Gastrodia elata | 4.200 | |
| SRR5643659 | five period of Gastrodia elata | 5.220 | |
| SRR5643660 | five period of Gastrodia elata | 4.540 | |
| SRR5643661 | five period of Gastrodia elata | 5.010 | |
| SRR5643662 | five period of Gastrodia elata | 5.310 | |
| SRR5643663 | five period of Gastrodia elata | 6.950 | |
| SRR5643664 | five period of Gastrodia elata | 5.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.13 |
| Juven | Juvenile tuber | 10.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.45 | |
| Mother_Juven | Mother tuber of Juvenile | 18.33 |