Detail information of GWHGAAEX015132/evm.TU.scaffold_64.127


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG23548.00E-96RNA Polymerase C (III) 37 kDa subunit
nrgi|743872427|ref|XP_010906546.1|8.55E-176PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X3 [Elaeis guineensis]
trEMBLtr|M0SE83|M0SE83_MUSAM1.00E-151Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P13160_001}
TAIRAT5G495308.00E-96SIN-like family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006727679792848367+
Transcript Sequence

Network for GWHGAAEX015132

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04801.12Sin_N964775.10E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14721RPC5, POLR3E RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.580
SRR2545915Juvenile tuber16.820
SRP108465SRR5643513five period of Gastrodia elata11.710
SRR5643514five period of Gastrodia elata11.080
SRR5643515five period of Gastrodia elata11.030
SRR5643524five period of Gastrodia elata10.100
SRR5643525five period of Gastrodia elata12.050
SRR5643528five period of Gastrodia elata11.650
SRR5643658five period of Gastrodia elata15.340
SRR5643659five period of Gastrodia elata11.900
SRR5643660five period of Gastrodia elata12.760
SRR5643661five period of Gastrodia elata12.130
SRR5643662five period of Gastrodia elata12.560
SRR5643663five period of Gastrodia elata13.580
SRR5643664five period of Gastrodia elata12.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.350
SRR6049655Rhizomagastrodiae_C368-T10_good_113.440
SRR6049656Rhizomagastrodiae_C368-T07_good_112.100
SRR6049657Rhizomagastrodiae_C368-T07_good_112.860
SRR6049658Rhizomagastrodiae_C368-T04_good_112.030
SRR6049659Rhizomagastrodiae_C368-T04_good_114.980
SRR6049660Rhizomagastrodiae_C368-T01_good_113.900
SRR6049661Rhizomagastrodiae_C368-T04_good_114.810
SRR6049662Rhizomagastrodiae_C368-T01_good_112.270
SRR6049663Rhizomagastrodiae_C368-T01_good_113.810
SRR6049664Rhizomagastrodiae_C368-T10_good_114.040
SRR6049665Rhizomagastrodiae_C368-T10_good_114.040
SRP279888GastroGastrodia elata tuber 16.43
JuvenJuvenile tuber23.18
Mother_GastroMother tuber of Gastrodia elata 9.19
Mother_JuvenMother tuber of Juvenile 16.70