Detail information of GWHGAAEX015137/evm.TU.scaffold_64.131
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374287939|ref|YP_005035024.1| | 6.00E-20 | putative glutathione S-transferase [Bacteriovorax marinus SJ] |
| KOG | KOG0867 | 7.00E-108 | Glutathione S-transferase |
| nr | gi|743758797|ref|XP_010928857.1| | 0 | PREDICTED: elongation factor 1-gamma 2 [Elaeis guineensis] |
| Swissprot | tr|Q6YW46|EF1G2_ORYSJ | 0 | Elongation factor 1-gamma 2 |
| trEMBL | tr|F6HK38|F6HK38_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55041.1} |
| TAIR | AT1G09640_1 | 7.00E-108 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 2873635 | 2877920 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015137
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02798.19 | GST_N | 3 | 75 | 2.00E-17 |
| PF00043.24 | GST_C | 134 | 197 | 8.60E-09 |
| PF00647.18 | EF1G | 257 | 365 | 2.40E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006414 | Biological Process | translational elongation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003746 | Molecular Function | translation elongation factor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 460.500 |
| SRR2545915 | Juvenile tuber | 432.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 298.250 |
| SRR5643514 | five period of Gastrodia elata | 294.780 | |
| SRR5643515 | five period of Gastrodia elata | 279.370 | |
| SRR5643524 | five period of Gastrodia elata | 275.130 | |
| SRR5643525 | five period of Gastrodia elata | 195.840 | |
| SRR5643528 | five period of Gastrodia elata | 252.000 | |
| SRR5643658 | five period of Gastrodia elata | 198.660 | |
| SRR5643659 | five period of Gastrodia elata | 326.060 | |
| SRR5643660 | five period of Gastrodia elata | 326.450 | |
| SRR5643661 | five period of Gastrodia elata | 329.270 | |
| SRR5643662 | five period of Gastrodia elata | 323.390 | |
| SRR5643663 | five period of Gastrodia elata | 317.420 | |
| SRR5643664 | five period of Gastrodia elata | 305.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 321.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 285.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 370.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 273.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 267.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 231.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 262.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 268.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 398.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 351.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 498.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 498.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 381.92 |
| Juven | Juvenile tuber | 290.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 214.45 | |
| Mother_Juven | Mother tuber of Juvenile | 251.87 |